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Revision 4949

Added by Aaron Marcuse-Kubitza almost 12 years ago

mappings/VegCore-VegBIEN.csv: Only use institutionCode+collectionCode+catalogNumber as the authorlocationcode (location-scoping ID) if there is actually a catalogNumber. Otherwise, the mapping process would attempt to create one location for each collection in the datasource, when there should be one location for each specimen.

View differences:

inputs/MT/Specimen/VegBIEN.csv
1 1 
MT,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
3 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
4 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
5 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
6 6 
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
7 7 
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
8 8 
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
inputs/MT/Specimen/test.xml.ref
4 4 
        <next>parent_id</next>
5 5 
        <path>
6 6 
            <location>
7 
                <authorlocationcode>
8 
                    <_alt>
9 
                        <1>$id</1>
10 
                        <2>
11 
                            <_join>
12 
                                <1>$institutionCode</1>
13 
                                <2>
14 
                                    <_join>
15 
                                        <1>$collectionCode</1>
16 
                                        <2>$collectionID</2>
17 
                                    </_join>
18 
                                </2>
19 
                            </_join>
20 
                        </2>
21 
                    </_alt>
22 
                </authorlocationcode>
7 
                <authorlocationcode>$id</authorlocationcode>
23 8 
                <locationevent>
24 9 
                    <taxonoccurrence>
25 10 
                        <aggregateoccurrence>
inputs/XAL/Specimen/VegBIEN.csv
1 1 
XAL:/content/record/,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 
darwin:InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
3 
darwin:CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
4 
darwin:CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
2 
darwin:CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
3 
darwin:InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
4 
darwin:CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
5 
darwin:CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
5 6 
darwin:MaximumElevation,/location/elevation_m/_alt/2/_avg/max,
6 7 
darwin:MinimumElevation,/location/elevation_m/_alt/2/_avg/min,
7 8 
darwin:CoordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2,
inputs/NY/Specimen/VegBIEN.csv
1 1 
NY,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
UniqueNYInternalRecordNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4 
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
3 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4 
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
5 
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
6 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
6 7 
MaximumElevation,/location/elevation_m/_alt/2/_avg/max,
7 8 
MinimumElevation,/location/elevation_m/_alt/2/_avg/min/_nullIf:[null=.]/value,
8 9 
CoordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2,
inputs/Madidi/Organism/VegBIEN.csv
2 2 
Number of subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
3 3 
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
4 4 
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
5 
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
5 
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
6 
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
6 7 
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
7 8 
Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
8 9 
Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
inputs/UNCC/Specimen/VegBIEN.csv
1 1 
UNCC,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
herbarium,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
3 
herbarium,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
4 4 
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
5 5 
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
6 6 
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
inputs/UNCC/Specimen/test.xml.ref
4 4 
        <next>parent_id</next>
5 5 
        <path>
6 6 
            <location>
7 
                <authorlocationcode>
8 
                    <_alt>
9 
                        <1>$accession</1>
10 
                        <2>$herbarium</2>
11 
                    </_alt>
12 
                </authorlocationcode>
7 
                <authorlocationcode>$accession</authorlocationcode>
13 8 
                <locationevent>
14 9 
                    <taxonoccurrence>
15 10 
                        <aggregateoccurrence>
inputs/ACAD/Specimen/VegBIEN.csv
1 1 
ACAD,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
6 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
3 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
5 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
6 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
7 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
7 8 
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
8 9 
decimalLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
9 10 
decimalLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
inputs/SALVIAS-CSV/Organism/VegBIEN.csv
2 2 
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
3 3 
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
4 4 
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
5 
det_type,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
6 
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
7 
voucher_string,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
5 
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/1",Brad: Map instead as for voucher_string
6 
voucher_string,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
7 
det_type,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
8 
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
9 
voucher_string,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
8 10 
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
9 11 
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
10 12 
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
inputs/REMIB/Specimen/VegBIEN.csv
1 1 
REMIB,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
3 
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
4 4 
lat_deg,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
5 5 
long_deg,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
6 6 
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
inputs/REMIB/Specimen/test.xml.ref
4 4 
        <next>parent_id</next>
5 5 
        <path>
6 6 
            <location>
7 
                <authorlocationcode>
8 
                    <_alt>
9 
                        <1>$accession_number</1>
10 
                        <2>$acronym</2>
11 
                    </_alt>
12 
                </authorlocationcode>
7 
                <authorlocationcode>$accession_number</authorlocationcode>
13 8 
                <locationcoords>
14 9 
                    <latitude_deg>
15 10 
                        <_nullIf>
inputs/SALVIAS/plotObservations/VegBIEN.csv
2 2 
Line,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
3 3 
PlotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
4 4 
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
5 
DetType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
6 
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
7 
SourceVoucher,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
5 
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/1",Brad: Map instead as for voucher_string
6 
SourceVoucher,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
7 
DetType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
8 
coll_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string
9 
SourceVoucher,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
8 10 
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
9 11 
PlotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
10 12 
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
inputs/U/Specimen/VegBIEN.csv
1 1 
U,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
3 
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4 
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
4 5 
Lat,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
5 6 
Long,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
6 7 
Colldd,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
inputs/ARIZ/Specimen/VegBIEN.csv
1 1 
ARIZ,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4 
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5 
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
6 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
3 
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/1",
4 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/2",Don't overwrite CatalogNumberNumeric
5 
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
6 
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
7 
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
8 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
7 9 
MaximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,"Contains some verbatim values, including ranges and units"
8 10 
MinimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,"Contains some verbatim values, including ranges and units"
9 11 
CoordinateUncertaintyInMeters,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1,
inputs/GBIF/Specimen/VegBIEN.csv
1 1 
GBIF,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 
InstitutionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
3 
CollectionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
4 
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
2 
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
3 
InstitutionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
4 
CollectionCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
5 
CatalogNO,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
5 6 
MaximumElevationInMeter,/location/elevation_m/_alt/2/_avg/max,
6 7 
MinimumElevationInMeter,/location/elevation_m/_alt/2/_avg/min,
7 8 
VerbatimLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
inputs/NCU-NCSC/Specimen/VegBIEN.csv
1 1 
NCU-NCSC,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
Accession Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
SeriesName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
4 
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
3 
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4 
SeriesName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
5 
Barcode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
5 6 
Elevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
6 7 
Accuracy,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1,
7 8 
Lat (-=S),"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",
inputs/SpeciesLink/Specimen/VegBIEN.csv
1 1 
SpeciesLink,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
dwc_dwcore_GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
conceptual_darwin_2003_1_0_InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4 
dwc_dwcore_InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
5 
dwc_terms_institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
6 
conceptual_darwin_2003_1_0_CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
7 
dwc_dwcore_CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
8 
dwc_terms_collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
9 
dwc_terms_collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
10 
conceptual_darwin_2003_1_0_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
11 
dwc_dwcore_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
12 
dwc_terms_catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
3 
conceptual_darwin_2003_1_0_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4 
dwc_dwcore_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
5 
dwc_terms_catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
6 
conceptual_darwin_2003_1_0_InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
7 
dwc_dwcore_InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
8 
dwc_terms_institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
9 
conceptual_darwin_2003_1_0_CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
10 
dwc_dwcore_CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
11 
dwc_terms_collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
12 
dwc_terms_collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
13 
conceptual_darwin_2003_1_0_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
14 
dwc_dwcore_CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
15 
dwc_terms_catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
13 16 
conceptual_darwin_2003_1_0_MaximumElevation,/location/elevation_m/_alt/2/_avg/max,
14 17 
dwc_dwcore_MaximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,
15 18 
dwc_terms_maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,
inputs/MO/Specimen/VegBIEN.csv
1 1 
MO,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
3 
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
4 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
2 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
3 
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
4 
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
5 
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
5 6 
MaximumElevation,/location/elevation_m/_alt/2/_avg/max,
6 7 
MinimumElevation,/location/elevation_m/_alt/2/_avg/min,
7 8 
latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
inputs/VegBank/taxonobservation_/VegBIEN.csv
1 1 
VegBank,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 
museumaccessionnumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
2 
museumaccessionnumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
3 
museumaccessionnumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
3 4 
observation_id,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
4 5 
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1",
5 6 
observation_id,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
inputs/QMOR/Specimen/VegBIEN.csv
1 1 
QMOR,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2 
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
4 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
5 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
6 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
3 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
5 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
6 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
7 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
7 8 
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
8 9 
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,
9 10 
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,
mappings/VegCore-VegBIEN.csv
5 5 
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
6 6 
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
7 7 
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
8 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/1",
9 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/1",
10 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/2/_join/2",
11 
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
12 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_join/3/_if[@name=""if indirect voucher""]/else",
8 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
9 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
10 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
11 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
12 
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
13 
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
13 14 
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
14 15 
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
15 16 
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
mappings/for_review/VegCore-VegBIEN.csv
5 5 
locationID,"/location/authorlocationcode/_if[@name=""if locationID""]/cond/_exists",
6 6 
fieldNumber,"/location/authorlocationcode/_if[@name=""if locationID""]/else",
7 7 
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
8 
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
9 
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
10 
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
8 
catalogNumber,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/cond/_exists",
9 
institutionCode,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then",
10 
collectionCode,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then",
11 
collectionID,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then",
11 12 
voucherType,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/cond",
12 13 
catalogNumber,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/else",
13 14 
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",

Also available in: Unified diff