Project

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1
VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
subplotID,"/location/_if[@name=""if subplot""]/cond/_exists/_first/1",
3
subplot,"/location/_if[@name=""if subplot""]/cond/_exists/_first/2",
4
plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
5
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
6
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
7
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
8
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
9
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
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collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
11
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
12
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
13
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
14
locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
15
plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
16
locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
17
plotArea_m2,/location/area_m2,
18
plotArea_ha,/location/area_m2/_ha_to_m2/value,
19
subplot,/location/authorlocationcode,
20
elevationInMeters,/location/elevation_m/_alt/1,
21
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
22
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,
23
verbatimElevation_m,/location/elevation_m/_alt/2/_avg/max/_rangeEnd/value,
24
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,
25
verbatimElevation_m,/location/elevation_m/_alt/2/_avg/min/_rangeStart/value,
26
verbatimElevation_m,/location/elevationrange_m/_range/from/_rangeStart/value,
27
verbatimElevation_m,/location/elevationrange_m/_range/to/_rangeEnd/value,
28
landform,/location/landform,
29
coordinateUncertaintyInMeters,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1,
30
coordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2,
31
footprintWKT,/location/locationcoords/footprintgeometry_dwc,
32
decimalLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
33
decimalLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
34
latitude_DMS,/location/locationcoords/verbatimlatitude,
35
verbatimLatitude,/location/locationcoords/verbatimlatitude,
36
longitude_DMS,/location/locationcoords/verbatimlongitude,
37
verbatimLongitude,/location/locationcoords/verbatimlongitude,
38
samplingProtocol,/location/locationevent/*_id/method/name,
39
projectName,/location/locationevent/*_id/project/projectname,
40
projectID,/location/locationevent/*_id/project/sourceaccessioncode,
41
subplotID,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/1",
42
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists/_first/2",
43
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
44
eventID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
45
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/1",
46
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists/_first/2",
47
plotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
48
locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
49
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
50
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
51
communityID,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
52
communityName,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
53
endDate,/location/locationevent/obsenddate/_*/date/_alt/1,
54
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value,
55
startDate,/location/locationevent/obsstartdate/_*/date/_alt/1,
56
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value,
57
precipitation,/location/locationevent/precipitation_m,
58
acidity_percent,/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value,
59
baseSaturation_percent,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,
60
calcium_percent,/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value,
61
carbon_percent,/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value,
62
cationExchangeCapacity_cmol_kg,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
63
clay_percent,/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value,
64
conductivity,/location/locationevent/soilobs/conductivity,
65
magnesium_percent,/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value,
66
nitrogen_percent,/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value,
67
organic_percent,/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value,
68
ph,/location/locationevent/soilobs/ph,
69
phosphorus_percent,/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value,
70
potassium_percent,/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value,
71
sand_percent,/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value,
72
silt_percent,/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value,
73
sodium_percent,/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value,
74
texture,/location/locationevent/soilobs/texture,
75
dateCollected,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date,
76
dayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
77
monthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
78
yearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
79
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
80
coverPercent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
81
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
82
intercept_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m,
83
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value,
84
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
85
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
86
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
87
individualID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode,
88
voucherType,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
89
catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
90
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
91
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
92
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
93
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
94
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,
95
authorStemCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode,
96
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m,
97
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
98
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
99
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
100
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
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stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
102
diameterBreastHeight_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m,
103
diameterBreastHeight_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,
104
diameterBreastHeight_in,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_in_to_m/value,
105
height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,
106
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch_m,
107
stemID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
108
tag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag,
109
organismX,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,
110
organismY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,
111
aggregateOccurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode,
112
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/1,
113
locationID,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",
114
plotName,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists",
115
tag,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/then",
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verbatimScientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_first/1,
117
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_first/2,
118
scientificName,/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_first/3,
119
growthForm,/location/locationevent/taxonoccurrence/growthform,
120
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
121
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,
122
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value",
123
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value",
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taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,
125
individualID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2,
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occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
127
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first,
128
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle,
129
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last,
130
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author,
131
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class,
132
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/cultivar,
133
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
134
forma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/forma,
135
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
136
kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/kingdom,
137
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/order,
138
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/phylum,
139
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificname,
140
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/scientificnamewithauthor,
141
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
142
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/1,
143
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_name/first,
144
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_name/last,
145
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/variety,
146
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value,
147
dayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
148
monthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
149
yearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
150
taxonRemarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
151
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
152
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/author,
153
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/class,
154
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,
155
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus,
156
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/kingdom,
157
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/order,
158
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/phylum,
159
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/scientificname,
160
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,
161
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies,
162
verbatimIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
163
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname,
164
recordedBy.givenName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/first,
165
recordedBy.surName,/location/locationevent/taxonoccurrence/verbatimcollectorname/_name/last,
166
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left",
167
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
168
temperature,/location/locationevent/temperature_c,
169
maximumDepthInMeters,/location/locationevent/waterdepth_m/_avg/max,
170
minimumDepthInMeters,/location/locationevent/waterdepth_m/_avg/min,
171
locality,/location/locationnarrative/_merge/1,
172
verbatimLocality,/location/locationnarrative/_merge/2,
173
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
174
continent,/location/locationplace/*_id/placepath/continent,
175
country,/location/locationplace/*_id/placepath/country,
176
county,/location/locationplace/*_id/placepath/county,
177
stateProvince,/location/locationplace/*_id/placepath/stateprovince,
178
plotNotes,/location/notespublic,
179
parentPlotName,/location/parent_id/location/authorlocationcode,
180
parentLocationID,/location/parent_id/location/sourceaccessioncode,
181
slopeAspect,/location/slopeaspect_deg/_alt/1/_compass/value,
182
maxSlopeAspect,/location/slopeaspect_deg/_alt/2/_avg/max,
183
minSlopeAspect,/location/slopeaspect_deg/_alt/2/_avg/min,
184
slopeGradient,/location/slopegradient_fraction/_alt/1,
185
maxSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/max,
186
minSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/min,
187
subplotID,/location/sourceaccessioncode,
188
subplotX,/location/sublocationxposition_m,
189
subplotY,/location/sublocationyposition_m,
190
verbatimElevation,/location/verbatimelevation,
191
verbatimElevation_m,/location/verbatimelevation,
192
OMIT,,
193
PRIVATE,,
194
UNUSED,,
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