Processed 2 input rows

Inserted 0 new rows into database

Processed 2 input rows

Inserted 28 new rows into database

Processed 2 input rows

Inserted 124 new rows into database

SALVIAS:stems,VegBIEN:/stemobservation,Comments

link ../../../mappings/SALVIAS_db-VegX.plots.csv

link ../../../mappings/SALVIAS_db-VegX.organisms.csv

SALVIAS:plotMetadata,VegBIEN:/plotevent,Comments

plot_area_ha,/*_id/plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"

Elev,/*_id/plot/elevation/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

Country,"/*_id/plot/place(/*_id/namedplace[placesystem=""area|country|territory""])/placename",

PolDiv1,"/*_id/plot/place(/*_id/namedplace[placesystem=""region|state|province""])/placename",Brad: No; pol1=stateProvince

MajorGeo,/*_id/plot/place(/*_id/namedplace[placesystem=continent])/placename,

pol2,/*_id/plot/place(/*_id/namedplace[placesystem=county])/placename,Brad: No pol2=countyParish

Locality_Description,/*_id/plot/place/*_id/namedplace/placedescription,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"

LatDec,/*_id/plot/reallatitude,

LongDec,/*_id/plot/reallongitude,

slope_aspect,/*_id/plot/slopeaspect,

slope_gradient,/*_id/plot/slopegradient,

elev_max_m,"/*_id/plot/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",

elev_min_m,"/*_id/plot/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",

project_id,/*_id/project/projectname,

PlotID,/authorcode/_alt/1,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."

life_zone_code,/commclass/commdetermination/*_id/commconcept/*_id/*/commname,

life_zone,/commclass/commdetermination/*_id/commconcept/commdescription,

Precip,"/definedvalue[*_id/userdefined[tablename=plotevent,userdefinedname=precipitationMm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

Temp,"/definedvalue[*_id/userdefined[tablename=plotevent,userdefinedname=temperatureC]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

PlotMethod,/methodnarrative,

date_finish,/obsenddate/_date/date,

date_start,/obsstartdate/_date/date,

soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",

clay_percent,/soilobs:[soilhorizon=unknown]/soilclay,

organic_percent,/soilobs:[soilhorizon=unknown]/soilorganic,

pH,/soilobs:[soilhorizon=unknown]/soilph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."

sand_percent,/soilobs:[soilhorizon=unknown]/soilsand,

silt_percent,/soilobs:[soilhorizon=unknown]/soilsilt,

soil_texture,/soilobs:[soilhorizon=unknown]/soiltexture,

SiteCode,"/{*_id/plot:[confidentialitystatus=0]/authorcode/_alt/2,authorcode/_alt/2}",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)

SALVIAS:plotObservations,VegBIEN:/taxonoccurrence,Comments

PlotID,/*_id/plotevent/authorcode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."

PlotCode,"/*_id/plotevent/{*_id/plot:[confidentialitystatus=0]/authorcode/_alt/2,authorcode/_alt/2}","Brad: Same as plotCode, above"

NoInd,/aggregateoccurrence/count/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."

cover_percent,/aggregateoccurrence/cover,

intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."

temp_dbh,/aggregateoccurrence/individualplant/diameter,

height_m,/aggregateoccurrence/individualplant/height,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob

coll_number,/aggregateoccurrence/individualplant/specimen:[*_id/reference]/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string

census_date,/aggregateoccurrence/individualplant/specimen:[*_id/reference]/collectiondate/_date/date,

coll_firstname,"/aggregateoccurrence/individualplant/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above

coll_lastname,/aggregateoccurrence/individualplant/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."

tag2,/aggregateoccurrence/individualplant/stem/authorcode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."

tag1,/aggregateoccurrence/individualplant/stem/authorcode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."

ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob

x_position,/aggregateoccurrence/individualplant/stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."

y_position,/aggregateoccurrence/individualplant/stem/yposition,Brad: See comment above for x_position

census_no,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."

cfaff,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."

DetType,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."

Habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."

Ind,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."

Notes,/taxondetermination[role_id/aux_role/rolecode=collector]/notes,

Family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/{*_id/*/plantname,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}",

Genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/{*_id/*/plantname,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}",

auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/plantname/reference_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.

Species,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/{*_id/*/plantname,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}",

infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname/_name/first}",

infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/{*_id/*/plantname/_name/last,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname/_name/last}",

OrigFamily,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/{*_id/*/plantname,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}",Brad: OMIT

OrigSpecies,"/{taxondetermination[role_id/aux_role/rolecode=collector]/*_id/*/plantname/_alt/2,taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/{*_id/*/plantname,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}}",Brad: OMIT

PlotObsID,":[aggregateoccurrence/count/_alt/2=1]/{taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=false,determinationdate=epoch,*_id/party]/museumaccessionnumber,*_id/plotevent/authorcode/_alt/2,*_id/plotevent/*_id/plot:[confidentialitystatus=0]/authorcode/_alt/3}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."

"SALVIAS:stems","VegX:/*s/individualOrganismObservation[relatedItem/relationshipType=stemParent]","Comments"

"stem_id",,

"origrecord_id_stems",,

"PlotObsID","/relatedItem[relationshipType=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher",

"NoInd","/simpleUserdefined[name=count]/value",

"basal_diam","/diameterBaseDistance[baseDistance=0]/diameter",

"stem_dbh","/diameterBaseDistance[baseDistance=1.37]/diameter",

"gentry_dbh","/diameterBaseDistance[baseDistance=1.37]/diameter",

"stem_notes","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text",

"stem_tag1","/*ID->/*s/individualOrganism/identificationLabel",

"stem_tag2","/*ID->/*s/individualOrganism/identificationLabel",

"stem_height_m","/simpleUserdefined[name=stemHeightM]/value",

"stem_height_first_branch_m","/simpleUserdefined[name=stemHeightFirstBranchM]/value",

"stem_canopy_form","/simpleUserdefined[name=stemCanopyForm]/value",

"stem_canopy_position","/simpleUserdefined[name=stemCanopyPosition]/value",

"stem_liana_infestation","/simpleUserdefined[name=stemLianaInfestation]/value",

"tmp_del",,

SELECT '# projects' AS ___;

SELECT count(*) AS count FROM project;

SELECT 'projects' AS ___;

SELECT projectname AS project FROM project ORDER BY project;

SELECT E'each project\'s # plots' AS ___;

SELECT projectname AS project, count(*) AS plots_count

FROM project

JOIN plotevent USING (project_id)

GROUP BY project

ORDER BY project

;

SELECT '# plots' AS ___;

SELECT count(*) AS count FROM plot;

SELECT '# plot observations' AS ___;

SELECT count(*) AS count FROM plotevent;

SELECT '1st methods' AS ___;

SELECT DISTINCT

    projectname AS project

    , stemSampleMethod AS method -- placeholder until we have a method field

FROM project

JOIN plotevent USING (project_id)

ORDER BY project, method

LIMIT 10;

SELECT '1st method narratives' AS ___;

SELECT DISTINCT

    projectname AS project

    , methodNarrative AS method_narrative

FROM project

JOIN plotevent USING (project_id)

ORDER BY project, method_narrative

LIMIT 10;

SELECT '# projects' AS ___;

SELECT count(*) AS count FROM projects;

SELECT 'projects' AS ___;

SELECT CAST(project_id AS char) AS project FROM projects ORDER BY project;

SELECT 'each project\'s # plots' AS ___;

SELECT

    CAST(projects.project_id AS char) AS project

    , count(PlotID) AS plots_count

FROM projects

JOIN plotMetadata ON plotMetadata.project_id = projects.project_id

GROUP BY project

ORDER BY project

;

SELECT '# plots' AS ___;

SELECT count(*) AS count FROM plotMetadata;

SELECT '# plot observations' AS ___;

SELECT count(*) AS count FROM plotMetadata;

SELECT '1st methods' AS ___;

SELECT DISTINCT

    CAST(projects.project_id AS char) AS project

    , lookup_MethodCode.Description AS method

FROM projects

JOIN plotMetadata ON plotMetadata.project_id = projects.project_id

JOIN lookup_MethodCode ON lookup_MethodCode.MethodCode = plotMetadata.MethodCode

ORDER BY project, method

LIMIT 10;

SELECT '1st method narratives' AS ___;

SELECT DISTINCT

    CAST(projects.project_id AS char) AS project

    , PlotMethod AS method_narrative

FROM projects

JOIN plotMetadata ON plotMetadata.project_id = projects.project_id

ORDER BY project, method_narrative

LIMIT 10;

/*

SELECT p.PlotID, p.SiteCode, COUNT(*)

FROM projects pr JOIN plotMetadata p JOIN plotObservations o

ON pr.project_id=p.project_id AND p.PlotID=o.PlotID

WHERE p.project_id=2

GROUP BY p.PlotID, p.SiteCode;

SELECT NoInd, COUNT(*) AS observations

FROM plotObservations o JOIN plotMetadata p 

ON o.PlotID=p.PlotID

WHERE project_id=2

GROUP BY NoInd;

SELECT p.PlotID, p.SiteCode, SUM(NoInd) AS Individuals

FROM projects pr JOIN plotMetadata p JOIN plotObservations o

ON pr.project_id=p.project_id AND p.PlotID=o.PlotID

WHERE p.project_id=2

GROUP BY p.PlotID, p.SiteCode;

SELECT DISTINCT pr.project_id, project_name, PlotMethod, m.MethodCode, m.Description

FROM projects pr JOIN plotMetadata p JOIN lookup_MethodCode m

ON pr.project_id=p.project_id AND p.MethodCode=m.MethodCode

WHERE m.MethodCode=8;

SELECT NoInd, COUNT(*) AS observations

FROM plotObservations o JOIN plotMetadata p JOIN lookup_MethodCode m

ON o.PlotID=p.PlotID AND p.MethodCode=m.MethodCode

WHERE project_id=2

GROUP BY NoInd;

SELECT p.PlotID, p.SiteCode, SUM(NoInd) AS Individuals

FROM projects pr JOIN plotMetadata p JOIN plotObservations o

ON pr.project_id=p.project_id AND p.PlotID=o.PlotID

WHERE p.project_id=1

GROUP BY p.PlotID, p.SiteCode

LIMIT 10;

SELECT PlotMethod, MethodCode, Description, COUNT(project_id) as projects

FROM (

SELECT DISTINCT p.PlotMethod, p.MethodCode, p.Description, p.project_id

FROM (

SELECT project_id, PlotID, PlotMethod, m.MethodCode, m.Description

FROM plotMetadata p JOIN lookup_MethodCode m

ON p.MethodCode=m.MethodCode

) p JOIN plotObservations o JOIN stems s

ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID

GROUP BY project_id

) AS a

GROUP BY PlotMethod, MethodCode, Description;

SELECT DISTINCT pr.project_id, project_name

FROM projects pr JOIN plotMetadata p JOIN plotObservations o JOIN stems s

ON pr.project_id=p.project_id AND p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID

WHERE p.MethodCode=3;

SELECT p.PlotID, SiteName as plot, COUNT(*) AS stems

FROM plotMetadata p JOIN plotObservations o JOIN stems s

ON p.PlotID=o.PlotID AND o.PlotObsID=s.PlotObsID

WHERE p.project_id=2

GROUP BY p.PlotID, SiteName

LIMIT 10;

SELECT p.PlotID, SiteName AS plot, COUNT(DISTINCT Family, Genus, Species) AS SpeciesCount

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE project_id=2

GROUP BY p.PlotID, SiteName;

SELECT DISTINCT p.PlotID, SiteName AS plot, Family, CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=298;

SELECT name_status, count(*) FROM plotObservations GROUP BY name_status;

SELECT DISTINCT p.PlotID, SiteName AS plot, Family, 

CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, name_status

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=298;

SELECT DISTINCT p.PlotID, SiteName AS plot, Family, 

CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, name_status

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=298 AND name_status=1;

SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, COUNT(*) AS individuals

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=298 

GROUP BY p.PlotID, plot, subplot;

SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, SUM(NoInd) AS individuals

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=298

GROUP BY p.PlotID, plot, subplot;

SELECT p.PlotID, SiteCode AS plot, o.Line as subplot, SUM(NoInd) AS individuals

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=1

GROUP BY p.PlotID, plot, subplot;

SELECT COUNT(*) FROM plotMetadata WHERE MethodCode=1;

SELECT PlotID FROM plotMetadata WHERE MethodCode=1 LIMIT 1;

SELECT p.PlotID, SiteCode AS plot, Family, 

CONCAT_WS(' ',IFNULL(Genus,''), IFNULL(Species,'')) AS SpeciesName, cover_percent

FROM plotMetadata p JOIN plotObservations o

ON p.PlotID=o.PlotID

WHERE p.PlotID=24589;

SELECT p.PlotID, p.SiteCode as plot, Country, PolDiv1 AS stateProvince, pol2 AS countyParish, 

LatDec as latitude, LongDec as longitude, Elev as elevation

FROM projects pr JOIN plotMetadata p

ON pr.project_id=p.project_id

WHERE pr.project_id=1

LIMIT 20;

SELECT AccessCode, COUNT(*)

FROM plotMetadata

GROUP BY AccessCode;

SELECT pr.project_id, project_name, project_pi, allow_download_all, PlotID, SiteCode, Country

FROM projects pr JOIN plotMetadata p

ON pr.project_id=p.project_id

WHERE p.AccessCode=1;

*/

___

# projects

count

23

___

projects

project

1

10

11

12

13

14

16

17

18

19

2

21

22

23

24

25

26

3

5

6

7

8

9

___

each project's # plots

project	plots_count

1	228

10	22

11	12962

12	28

13	2

14	99

16	2

17	6

18	3

19	4

2	37

21	3

22	1

23	70

24	4

25	28

3	20

5	102

6	29

7	9

8	1

9	1

___

# plots

count

13661

___

# plot observations

count

13661

___

1st methods

project	method

1	species (stems)

10	individuals

11	species (percent cover)

12	individuals

13	individuals

14	individuals

17	individuals

18	individuals

19	individuals

2	individuals

___

1st method narratives

project	method_narrative

1	0.1 ha  transect, stems >= 2.5 cm dbh

10	NULL

10	"Pseudotransect": collection of leaf samples from species recorded in previous 0.1 ha transect. Species sampled  from same location as previous transect "c2750-1" (project "Boyle Transects"); do not necessarily correspond to same individuals.

10	"Pseudotransect": collection of leaf samples from species recorded in previous 0.1 ha transect. Species sampled  from same location as previous transect "Savegre1" (project "OTS Transects"); do not necessarily correspond to same individuals.

10	0.1 ha  transect, stems >= 2.5 cm dbh

11	20 m x 20 cover plots, all vascular plants

12	0.01 ha, stems >= 10 cm dbh; 16 subplots of 10 x 10 m per plot, 4 rows (UU, U, S, SS), 4 columns (BB, B, T, TT)

13	1 ha, stems >= 10 cm dbh

14	0.1 ha  transect, stems >= 2.5 cm dbh

16	NULL