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1
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VegCore,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
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2
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subplot,"/location/_if[@name=""if subplot""]/cond/_exists",
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3
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plotName,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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4
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locationID,"/location/authorlocationcode/_if[@name=""if locationID""]/cond/_exists",
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5
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fieldNumber,"/location/authorlocationcode/_if[@name=""if locationID""]/else",
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6
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occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode",
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7
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catalogNumber,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/cond/_exists",
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8
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institutionCode,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then",
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9
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collectionCode,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then",
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10
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collectionID,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then",
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11
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voucherType,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/cond",
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12
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catalogNumber,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/else",
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13
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locationID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode",
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14
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plotName,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
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15
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locationID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
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16
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plotArea_m2,//location/area_m2,
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17
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plotArea_ha,//location/area_m2/_ha_to_m2/value,
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18
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subplot,//location/authorlocationcode,
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19
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elevationInMeters,//location/elevation_m,
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20
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verbatimElevation,//location/elevation_m,
|
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21
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maximumElevationInMeters,//location/elevation_m,
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22
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verbatimElevation_m,//location/elevation_m,
|
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23
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minimumElevationInMeters,//location/elevation_m,
|
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24
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verbatimElevation_m,//location/elevation_m,
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|
25
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verbatimElevation_m,//location/elevationrange_m,
|
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26
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verbatimElevation_m,//location/elevationrange_m,
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27
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landform,//location/landform,
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28
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coordinateUncertaintyInMeters,//locationcoords/coordsaccuracy_deg,
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29
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coordinatePrecision,//locationcoords/coordsaccuracy_deg,
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30
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footprintWKT,//locationcoords/footprintgeometry_dwc,
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31
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decimalLatitude,//locationcoords/latitude_deg,
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32
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decimalLongitude,//locationcoords/longitude_deg,
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33
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latitude_DMS,//locationcoords/verbatimlatitude,
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34
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verbatimLatitude,//locationcoords/verbatimlatitude,
|
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35
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longitude_DMS,//locationcoords/verbatimlongitude,
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36
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verbatimLongitude,//locationcoords/verbatimlongitude,
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37
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samplingProtocol,//method/name,
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38
|
projectName,//project/projectname,
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39
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projectID,//project/sourceaccessioncode,
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40
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subplot,"//location/locationevent/_if[@name=""if subplot""]/cond/_exists",
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41
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subplotID,"//location/locationevent/_if[@name=""if subplot""]/cond/_exists",
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42
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fieldNumber,"//location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
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43
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eventID,"//location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode",
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44
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eventID,"//location/locationevent/_if[@name=""if event""]/cond/_exists",
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45
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fieldNumber,"//location/locationevent/_if[@name=""if event""]/cond/_exists",
|
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46
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plotName,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",
|
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47
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locationID,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode",
|
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48
|
fieldNumber,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode",
|
|
49
|
eventID,"//location/locationevent/_if[@name=""if event""]/then/parent_id/locationevent/sourceaccessioncode",
|
|
50
|
communityID,//*/commname,
|
|
51
|
communityName,//commconcept/commdescription,
|
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52
|
endDate,//locationevent/obsenddate/_*/date,
|
|
53
|
eventDate,//locationevent/obsenddate/_*/date,
|
|
54
|
startDate,//locationevent/obsstartdate/_*/date,
|
|
55
|
eventDate,//locationevent/obsstartdate/_*/date,
|
|
56
|
precipitation,//locationevent/precipitation_m,
|
|
57
|
acidity_percent,//soilobs/acidity_fraction/_percent_to_fraction/value,
|
|
58
|
baseSaturation_percent,//soilobs/basesaturation_fraction/_percent_to_fraction/value,
|
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59
|
calcium_percent,//soilobs/calcium_fraction/_percent_to_fraction/value,
|
|
60
|
carbon_percent,//soilobs/carbon_fraction/_percent_to_fraction/value,
|
|
61
|
cationExchangeCapacity_cmol_kg,//soilobs/cationexchangecapacity_cmol_kg,
|
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62
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clay_percent,//soilobs/clay_fraction/_percent_to_fraction/value,
|
|
63
|
conductivity,//soilobs/conductivity,
|
|
64
|
magnesium_percent,//soilobs/magnesium_fraction/_percent_to_fraction/value,
|
|
65
|
nitrogen_percent,//soilobs/nitrogen_fraction/_percent_to_fraction/value,
|
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66
|
organic_percent,//soilobs/organic_fraction/_percent_to_fraction/value,
|
|
67
|
ph,//soilobs/ph,
|
|
68
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phosphorus_percent,//soilobs/phosphorus_fraction/_percent_to_fraction/value,
|
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69
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potassium_percent,//soilobs/potassium_fraction/_percent_to_fraction/value,
|
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70
|
sand_percent,//soilobs/sand_fraction/_percent_to_fraction/value,
|
|
71
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silt_percent,//soilobs/silt_fraction/_percent_to_fraction/value,
|
|
72
|
sodium_percent,//soilobs/sodium_fraction/_percent_to_fraction/value,
|
|
73
|
texture,//soilobs/texture,
|
|
74
|
dateCollected,//aggregateoccurrence/collectiondate/_*/date,
|
|
75
|
dayCollected,//aggregateoccurrence/collectiondate,
|
|
76
|
monthCollected,//aggregateoccurrence/collectiondate,
|
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77
|
yearCollected,//aggregateoccurrence/collectiondate,
|
|
78
|
individualCount,//aggregateoccurrence/count,
|
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79
|
coverPercent,//aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
|
|
80
|
censusNumber,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue",
|
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81
|
intercept_m,//aggregateoccurrence/linecover_m,
|
|
82
|
intercept_cm,//aggregateoccurrence/linecover_m/_cm_to_m/value,
|
|
83
|
fieldNotes,//aggregateoccurrence/notes,
|
|
84
|
recordNumber,//plantobservation/collectionnumber,
|
|
85
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sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
|
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86
|
individualID,//plantobservation/sourceaccessioncode,
|
|
87
|
voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
|
|
88
|
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
|
|
89
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collectionCode,//specimenreplicate/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
|
|
90
|
collectionID,//specimenreplicate/collectioncode_dwc,
|
|
91
|
institutionCode,//party/organizationname,
|
|
92
|
occurrenceID,//specimenreplicate/sourceaccessioncode,
|
|
93
|
stemCount,//plantobservation/stemcount,
|
|
94
|
authorStemCode,//stemobservation/authorstemcode,
|
|
95
|
basalDiameter,//stemobservation/basaldiameter_m,
|
|
96
|
canopyForm,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]/definedvalue",
|
|
97
|
canopyPosition,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]/definedvalue",
|
|
98
|
diameterBreastHeightGentry,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]/definedvalue",
|
|
99
|
lianaInfestation,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]/definedvalue",
|
|
100
|
stemNotes,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]/definedvalue",
|
|
101
|
diameterBreastHeight_m,//stemobservation/diameterbreastheight_m,
|
|
102
|
diameterBreastHeight_cm,//stemobservation/diameterbreastheight_m/_cm_to_m/value,
|
|
103
|
diameterBreastHeight_in,//stemobservation/diameterbreastheight_m/_in_to_m/value,
|
|
104
|
height,//stemobservation/height_m,
|
|
105
|
heightFirstBranch,//stemobservation/heightfirstbranch_m,
|
|
106
|
stemID,//stemobservation/sourceaccessioncode,
|
|
107
|
tag,//stemobservation/tag,
|
|
108
|
organismX,//stemobservation/xposition_m,
|
|
109
|
organismY,//stemobservation/yposition_m,
|
|
110
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aggregateOccurrenceID,//aggregateoccurrence/sourceaccessioncode,
|
|
111
|
recordNumber,//taxonoccurrence/authortaxoncode,
|
|
112
|
locationID,"//taxonoccurrence/authortaxoncode/_if[@name=""if is organism""]/cond/_exists",
|
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113
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plotName,"//taxonoccurrence/authortaxoncode/_if[@name=""if is organism""]/cond/_exists",
|
|
114
|
tag,"//taxonoccurrence/authortaxoncode/_if[@name=""if is organism""]/then",
|
|
115
|
verbatimScientificName,//taxonoccurrence/authortaxoncode,
|
|
116
|
scientificNameWithAuthorship,//taxonoccurrence/authortaxoncode,
|
|
117
|
scientificName,//taxonoccurrence/authortaxoncode,
|
|
118
|
growthForm,//taxonoccurrence/growthform,
|
|
119
|
verbatimGrowthForm,//taxonoccurrence/growthform,"According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
|
120
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cultivated,//taxonoccurrence/iscultivated,
|
|
121
|
establishmentMeans,//taxonoccurrence/iscultivated,
|
|
122
|
establishmentMeans,//taxonoccurrence/isnative,
|
|
123
|
taxonOccurrenceID,//taxonoccurrence/sourceaccessioncode,
|
|
124
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aggregateOccurrenceID,"//taxonoccurrence/sourceaccessioncode/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists",
|
|
125
|
individualID,"//taxonoccurrence/sourceaccessioncode/_if[@name=""if organism in AggregateOccurrence""]/else",
|
|
126
|
occurrenceID,//taxonoccurrence/sourceaccessioncode,
|
|
127
|
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/givenname,
|
|
128
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/middlename,
|
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129
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identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/surname,
|
|
130
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scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/author,
|
|
131
|
class,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/class,
|
|
132
|
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/cultivar,
|
|
133
|
family,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/family,
|
|
134
|
forma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/forma,
|
|
135
|
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/genus,
|
|
136
|
kingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/kingdom,
|
|
137
|
order,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/order,
|
|
138
|
phylum,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/phylum,
|
|
139
|
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/species,
|
|
140
|
subspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
|
|
141
|
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
|
|
142
|
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/subspecies,
|
|
143
|
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicname,
|
|
144
|
scientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
145
|
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
146
|
family,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
147
|
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
148
|
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
149
|
subspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
150
|
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
151
|
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
152
|
variety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
153
|
forma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
154
|
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
155
|
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonomicnamewithauthor,
|
|
156
|
variety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/variety,
|
|
157
|
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date,
|
|
158
|
dayIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
|
|
159
|
monthIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
|
|
160
|
yearIdentified,//taxonoccurrence/taxondetermination[]/determinationdate,
|
|
161
|
taxonRemarks,//taxonoccurrence/taxondetermination[]/notes,
|
|
162
|
identificationQualifier,//taxonoccurrence/taxondetermination[]/taxonfit,
|
|
163
|
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/author,
|
|
164
|
verbatimClass,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/class,
|
|
165
|
verbatimFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/family,
|
|
166
|
verbatimGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/genus,
|
|
167
|
verbatimKingdom,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/kingdom,
|
|
168
|
verbatimOrder,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/order,
|
|
169
|
verbatimPhylum,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/phylum,
|
|
170
|
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/species,
|
|
171
|
verbatimInfraspecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/subspecies,
|
|
172
|
verbatimScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonpath/taxonomicname,
|
|
173
|
verbatimIdentificationQualifier,//taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit,
|
|
174
|
recordedBy,//taxonoccurrence/verbatimcollectorname,
|
|
175
|
recordedBy.givenName,//taxonoccurrence/verbatimcollectorname,
|
|
176
|
recordedBy.surName,//taxonoccurrence/verbatimcollectorname,
|
|
177
|
voucherType,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond",
|
|
178
|
catalogNumber,"//specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
|
179
|
temperature,//locationevent/temperature_c,
|
|
180
|
maximumDepthInMeters,//locationevent/waterdepth_m,
|
|
181
|
minimumDepthInMeters,//locationevent/waterdepth_m,
|
|
182
|
locality,//location/locationnarrative,
|
|
183
|
verbatimLocality,//location/locationnarrative,
|
|
184
|
habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
|
185
|
continent,//placepath/continent,
|
|
186
|
country,//placepath/country,
|
|
187
|
county,//placepath/county,
|
|
188
|
stateProvince,//placepath/stateprovince,
|
|
189
|
plotNotes,//location/notespublic,
|
|
190
|
parentPlotName,//location/authorlocationcode,
|
|
191
|
parentLocationID,//location/sourceaccessioncode,
|
|
192
|
slopeAspect,//location/slopeaspect_deg,
|
|
193
|
maxSlopeAspect,//location/slopeaspect_deg,
|
|
194
|
minSlopeAspect,//location/slopeaspect_deg,
|
|
195
|
slopeGradient,//location/slopegradient_fraction,
|
|
196
|
maxSlopeGradient,//location/slopegradient_fraction,
|
|
197
|
minSlopeGradient,//location/slopegradient_fraction,
|
|
198
|
subplotID,//location/sourceaccessioncode,
|
|
199
|
subplotX,//location/sublocationxposition_m,
|
|
200
|
subplotY,//location/sublocationyposition_m,
|
|
201
|
verbatimElevation,//location/verbatimelevation,
|
|
202
|
verbatimElevation_m,//location/verbatimelevation,
|
|
203
|
subplotID,VegBIEN:,
|
|
204
|
OMIT,,
|
|
205
|
PRIVATE,,
|
|
206
|
UNUSED,,
|
