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#!/usr/bin/env python
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# A TNRS client
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# When using xargs to pass many names, note that xargs will by default split its
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# arguments into chunks of 5000. You can change this using the -n option.
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aaronmk
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# Note that obtaining an actual CSV requires four (!) steps: submit, retrieve,
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aaronmk
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# prepare download, and download.
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aaronmk
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import os.path
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import sys
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sys.path.append(os.path.dirname(__file__)+"/../lib")
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import opts
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import streams
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import tnrs
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def main():
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# Input
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env_names = []
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debug = opts.env_flag('debug', False, env_names)
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taxons = sys.argv[1:]
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if not taxons: raise SystemExit('Usage: '+opts.env_usage(env_names, True)
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+' '+sys.argv[0]+' taxon... >out 2>>log')
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streams.copy(tnrs.tnrs_request(taxons, debug), sys.stdout)
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main()
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