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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5095 about 12 years Aaron Marcuse-Kubitza tnrs_db: Added log messages for Making TNRS req...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5096 about 12 years Aaron Marcuse-Kubitza inputs/.TNRS/tnrs/tnrs.make: Added log option w...
  lib 5094 about 12 years Aaron Marcuse-Kubitza sql.py: insert(): ignore optimization: Fixed bu...
  mappings 5092 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Don't forward sci...
  schemas 5078 about 12 years Aaron Marcuse-Kubitza Regenerated vegbien.ERD exports
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 over 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 11.3 KB 5040 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: Starting column-based ...
map 1.28 KB 4981 about 12 years Aaron Marcuse-Kubitza root map: Fixed custom public schema override t...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5096 09/28/2012 09:07 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/tnrs.make: Added log option which outputs to the terminal instead when set to ""
5095 09/28/2012 09:01 AM Aaron Marcuse-Kubitza

tnrs_db: Added log messages for Making TNRS request and Storing TNRS response data so that if the TNRS daemon pauses, it's obvious which step it's waiting on
5094 09/28/2012 08:58 AM Aaron Marcuse-Kubitza

sql.py: insert(): ignore optimization: Fixed bug where needed to run insert_select() recoverably so that the aborted transaction is rolled back after a DuplicateKeyException or NullValueException
5093 09/28/2012 08:43 AM Aaron Marcuse-Kubitza

tnrs_db: If tnrs.repeated_tnrs_request() stil throws InvalidResponse, skip the current set in case its data caused the error. Note that it will still be tried again the next time tnrs_db is run.
5092 09/28/2012 08:34 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Don't forward scientificName to taxonoccurrence.authortaxoncode when importing just taxonpaths, as for TNRS
5091 09/28/2012 08:30 AM Aaron Marcuse-Kubitza

repeated_tnrs_request(): When retrying after an invalid response, output protocol info for debugging
5090 09/28/2012 08:29 AM Aaron Marcuse-Kubitza

inputs/Makefile: Import logs: Don't download .TNRS/tnrs/tnrs.make.log by default because it changes each time `make inputs/.TNRS/tnrs/tnrs-remake` is run, and any version downloaded for debugging should be preserved. It can still be downloaded by setting the tnrs_log env var.
5089 09/28/2012 08:17 AM Aaron Marcuse-Kubitza

tnrs_client, tnrs_db: Use new tnrs.repeated_tnrs_request()
5088 09/28/2012 08:16 AM Aaron Marcuse-Kubitza

tnrs.py: Added repeated_tnrs_request() to retry a TNRS request which returned an invalid response
5087 09/28/2012 08:05 AM Aaron Marcuse-Kubitza

db_xml.py: put_table(): Fixed bug where pkeys_loc needed to be initialized. Note that this bug was only triggered when importing a table with zero rows (in this case, the initial empty TNRS.tnrs table), because otherwise it would be set in the loop.

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