Revision 5130
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
Inventory code,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists", |
| 27 | 27 |
Inventory name,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists", |
| 28 | 28 |
Tag number,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/then", |
| 29 |
Specie+autor,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/cond/_exists", |
|
| 29 | 30 |
Specie+autor,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/2", |
| 30 | 31 |
Species and morphotypes,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/3","Contains less than ""Specie+autor""" |
| 31 | 32 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 18 | 18 |
id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 19 | 19 |
recordNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/1, |
| 20 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/cond/_exists", |
|
| 20 | 21 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/2", |
| 21 | 22 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 22 | 23 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/givenname/_namePart/first, |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 27 | 27 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 28 | 28 |
CollectorNumber,/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/1, |
| 29 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/cond/_exists",Contains the binomial in addition to the authority |
|
| 29 | 30 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/2",Contains the binomial in addition to the authority |
| 30 | 31 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/3", |
| 31 | 32 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 113 | 113 |
locationID,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists", |
| 114 | 114 |
plotName,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/cond/_exists", |
| 115 | 115 |
tag,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/1/_first/2/_if[@name=""if is organism""]/then", |
| 116 |
scientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/cond/_exists", |
|
| 116 | 117 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/cond/_exists", |
| 117 | 118 |
originalScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/1", |
| 118 | 119 |
scientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/2", |
| ... | ... | |
| 130 | 131 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/middlename/_namePart/middle, |
| 131 | 132 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/surname/_namePart/last, |
| 132 | 133 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author, |
| 134 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/author, |
|
| 135 |
acceptedClass,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/class, |
|
| 136 |
acceptedCultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/cultivar, |
|
| 137 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/family, |
|
| 138 |
acceptedForma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/forma, |
|
| 139 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/genus, |
|
| 140 |
acceptedKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/kingdom, |
|
| 141 |
acceptedOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/order, |
|
| 142 |
acceptedPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/phylum, |
|
| 143 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/species, |
|
| 144 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/1, |
|
| 145 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 146 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 147 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/2, |
|
| 148 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicname, |
|
| 149 |
acceptedScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/1, |
|
| 150 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1, |
|
| 151 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 152 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 153 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/3, |
|
| 154 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 155 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 156 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 157 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 158 |
acceptedVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
|
| 159 |
acceptedForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2", |
|
| 160 |
acceptedCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2", |
|
| 161 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/2, |
|
| 162 |
acceptedVariety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/variety, |
|
| 133 | 163 |
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class, |
| 134 | 164 |
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/cultivar, |
| 135 | 165 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 113 | 113 |
locationID,"//taxonoccurrence/authortaxoncode/_if[@name=""if is organism""]/cond/_exists", |
| 114 | 114 |
plotName,"//taxonoccurrence/authortaxoncode/_if[@name=""if is organism""]/cond/_exists", |
| 115 | 115 |
tag,"//taxonoccurrence/authortaxoncode/_if[@name=""if is organism""]/then", |
| 116 |
scientificNameWithAuthorship,"//taxonoccurrence/authortaxoncode/_if[@name=""if is taxonpath only""]/cond/_exists", |
|
| 116 | 117 |
verbatimScientificNameWithAuthorship,"//taxonoccurrence/authortaxoncode/_if[@name=""if is taxonpath only""]/cond/_exists", |
| 117 | 118 |
originalScientificName,"//taxonoccurrence/authortaxoncode/_if[@name=""if is taxonpath only""]/else", |
| 118 | 119 |
scientificNameWithAuthorship,"//taxonoccurrence/authortaxoncode/_if[@name=""if is taxonpath only""]/else", |
| ... | ... | |
| 130 | 131 |
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/middlename, |
| 131 | 132 |
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/surname, |
| 132 | 133 |
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/author, |
| 134 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/author, |
|
| 135 |
acceptedClass,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/class, |
|
| 136 |
acceptedCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/cultivar, |
|
| 137 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/family, |
|
| 138 |
acceptedForma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/forma, |
|
| 139 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/genus, |
|
| 140 |
acceptedKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/kingdom, |
|
| 141 |
acceptedOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/order, |
|
| 142 |
acceptedPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/phylum, |
|
| 143 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/species, |
|
| 144 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/subspecies, |
|
| 145 |
acceptedInfraspecificEpithet,"//taxonpath/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 146 |
acceptedTaxonRank,"//taxonpath/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 147 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/subspecies, |
|
| 148 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicname, |
|
| 149 |
acceptedScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 150 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 151 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 152 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 153 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 154 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 155 |
acceptedInfraspecificEpithet,"//taxonpath/taxonomicnamewithauthor/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 156 |
acceptedTaxonRank,"//taxonpath/taxonomicnamewithauthor/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 157 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 158 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 159 |
acceptedForma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 160 |
acceptedCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 161 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicnamewithauthor, |
|
| 162 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/variety, |
|
| 133 | 163 |
class,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/class, |
| 134 | 164 |
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/cultivar, |
| 135 | 165 |
family,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/family, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Mapped accepted* taxonomic terms