Revision 5131
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/.TNRS/tnrs/map.csv | ||
|---|---|---|
| 1 | 1 |
TNRS,VegCore,Filter,Comments |
| 2 | 2 |
Name_number,OMIT,, |
| 3 |
Name_submitted,verbatimScientificNameWithAuthorship,,
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|
| 3 |
Name_submitted,scientificNameWithAuthorship,,
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|
| 4 | 4 |
Overall_score,OMIT,, |
| 5 | 5 |
Name_matched,OMIT,, |
| 6 | 6 |
Name_matched_rank,OMIT,, |
| ... | ... | |
| 25 | 25 |
Annotations,OMIT,, |
| 26 | 26 |
Unmatched_terms,OMIT,, |
| 27 | 27 |
Taxonomic_status,taxonomicStatus,, |
| 28 |
Accepted_name,scientificName,,
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| 29 |
Accepted_name_author,scientificNameAuthorship,,
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| 30 |
Accepted_name_rank,taxonRank,,
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| 28 |
Accepted_name,acceptedScientificName,,
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| 29 |
Accepted_name_author,acceptedScientificNameAuthorship,,
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| 30 |
Accepted_name_rank,acceptedTaxonRank,,
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| 31 | 31 |
Accepted_name_url,OMIT,, |
| 32 | 32 |
Accepted_name_species,OMIT,,Also contains genus. Omitted because Accepted_name contains more info. |
| 33 |
Accepted_name_family,family,,
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| 33 |
Accepted_name_family,acceptedFamily,,
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| 34 | 34 |
Selected,OMIT,, |
| 35 | 35 |
Source,OMIT,, |
| 36 | 36 |
Warnings,OMIT,, |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
TNRS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
Name_submitted,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/cond/_exists", |
| 3 |
Accepted_name,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/3",
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| 4 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author, |
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| 5 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
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| 6 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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| 7 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname, |
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| 8 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1, |
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| 9 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1, |
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| 10 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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| 11 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/2/_join_words/2, |
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| 12 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath:[canon_taxonpath_id=0]/taxonpath:[@fkey=canon_taxonpath_id]/taxonomicnamewithauthor,
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Name_submitted,"/location/locationevent/taxonoccurrence/authortaxoncode/_first/2/_if[@name=""if is taxonpath only""]/else/_first/2",
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Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/author,
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| 5 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/family,
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| 6 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
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Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicname,
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Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/1,
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| 9 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/1,
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Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
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| 11 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicnamewithauthor/_alt/2/_join_words/2,
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| 12 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicnamewithauthor/_alt/1,
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| 13 | 13 |
Accepted_name_lsid,,** No non-empty join mapping for OMIT ** |
| 14 | 14 |
Accepted_name_species,,** No non-empty join mapping for OMIT ** Also contains genus. Omitted because Accepted_name contains more info. |
| 15 | 15 |
Accepted_name_url,,** No non-empty join mapping for OMIT ** |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 9 | 9 |
<taxondetermination> |
| 10 | 10 |
<taxonpath_id> |
| 11 | 11 |
<taxonpath> |
| 12 |
<author>$Accepted_name_author</author> |
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<family>$Accepted_name_family</family> |
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<taxonomicname>$Accepted_name</taxonomicname> |
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<taxonomicnamewithauthor> |
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<_join_words> |
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<1> |
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<_alt> |
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<1>$Accepted_name</1> |
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<2>$Accepted_name_family</2> |
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</_alt> |
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</1> |
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<2>$Accepted_name_author</2> |
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</_join_words> |
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</taxonomicnamewithauthor> |
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<canon_taxonpath_id>0</canon_taxonpath_id> |
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<taxonpath fkey="canon_taxonpath_id"><taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor></taxonpath> |
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<canon_taxonpath_id> |
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<taxonpath> |
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<canon_taxonpath_id>0</canon_taxonpath_id> |
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<author>$Accepted_name_author</author> |
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<family>$Accepted_name_family</family> |
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<taxonomicname>$Accepted_name</taxonomicname> |
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<taxonomicnamewithauthor> |
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<_join_words> |
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<1> |
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<_alt> |
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<1>$Accepted_name</1> |
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<2>$Accepted_name_family</2> |
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</_alt> |
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</1> |
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<2>$Accepted_name_author</2> |
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</_join_words> |
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</taxonomicnamewithauthor> |
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</taxonpath> |
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</canon_taxonpath_id> |
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<taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor> |
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| 28 | 32 |
</taxonpath> |
| 29 | 33 |
</taxonpath_id> |
| 30 | 34 |
</taxondetermination> |
| inputs/.TNRS/tnrs/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
Name_number,OMIT,, |
| 2 |
Name_submitted,verbatimScientificNameWithAuthorship,,
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| 2 |
Name_submitted,scientificNameWithAuthorship,,
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|
| 3 | 3 |
Overall_score,OMIT,, |
| 4 | 4 |
Name_matched,OMIT,, |
| 5 | 5 |
Name_matched_rank,OMIT,, |
| ... | ... | |
| 23 | 23 |
Infraspecific_epithet_2_score,OMIT,, |
| 24 | 24 |
Annotations,OMIT,, |
| 25 | 25 |
Unmatched_terms,OMIT,, |
| 26 |
Accepted_name,scientificName,,
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| 27 |
Accepted_name_author,scientificNameAuthorship,,
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| 28 |
Accepted_name_rank,taxonRank,,
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| 26 |
Accepted_name,acceptedScientificName,,
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| 27 |
Accepted_name_author,acceptedScientificNameAuthorship,,
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| 28 |
Accepted_name_rank,acceptedTaxonRank,,
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| 29 | 29 |
Accepted_name_url,OMIT,, |
| 30 | 30 |
Accepted_name_species,OMIT,,Also contains genus. Omitted because Accepted_name contains more info. |
| 31 |
Accepted_name_family,family,,
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| 31 |
Accepted_name_family,acceptedFamily,,
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| 32 | 32 |
Selected,OMIT,, |
| 33 | 33 |
Source,OMIT,, |
| 34 | 34 |
Warnings,OMIT,, |
Also available in: Unified diff
inputs/.TNRS/tnrs/map.csv: Remapped to new accepted* taxonomic terms