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1
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REMIB,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
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2
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accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
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3
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4
|
[1] Using the following query:
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5
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-----
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6
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SELECT acronym, accession_number, count(*)
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7
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FROM ""REMIB"".""Specimen""
|
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8
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GROUP BY acronym, accession_number
|
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9
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HAVING count(*) > 1
|
|
10
|
-----"
|
|
11
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acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
|
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12
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
13
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|
|
14
|
[1] Using the following query:
|
|
15
|
-----
|
|
16
|
SELECT acronym, accession_number, count(*)
|
|
17
|
FROM ""REMIB"".""Specimen""
|
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18
|
GROUP BY acronym, accession_number
|
|
19
|
HAVING count(*) > 1
|
|
20
|
-----"
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21
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lat_deg,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",
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22
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long_deg,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",
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23
|
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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24
|
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
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25
|
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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26
|
accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
27
|
|
|
28
|
[1] Using the following query:
|
|
29
|
-----
|
|
30
|
SELECT acronym, accession_number, count(*)
|
|
31
|
FROM ""REMIB"".""Specimen""
|
|
32
|
GROUP BY acronym, accession_number
|
|
33
|
HAVING count(*) > 1
|
|
34
|
-----"
|
|
35
|
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,
|
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36
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
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37
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
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38
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3",
|
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39
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,
|
|
40
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
|
|
41
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
|
|
42
|
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
|
|
43
|
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
44
|
|
|
45
|
[1] Using the following query:
|
|
46
|
-----
|
|
47
|
SELECT acronym, accession_number, count(*)
|
|
48
|
FROM ""REMIB"".""Specimen""
|
|
49
|
GROUP BY acronym, accession_number
|
|
50
|
HAVING count(*) > 1
|
|
51
|
-----"
|
|
52
|
locality,/location/locationnarrative/_merge/1,
|
|
53
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
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54
|
country,/location/locationplace/*_id/placepath/country,
|
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55
|
county,/location/locationplace/*_id/placepath/county,
|
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56
|
state,/location/locationplace/*_id/placepath/stateprovince,
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|
57
|
lat_min,,** No join mapping for *lat_min **
|
|
58
|
lat_sec,,** No join mapping for *lat_sec **
|
|
59
|
long_min,,** No join mapping for *long_min **
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60
|
long_sec,,** No join mapping for *long_sec **
|
|
61
|
preparation,,** No join mapping for preparations **
|
