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Revision 5181

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Remapped Author_matched as the scientificNameAuthorship instead of Name_matched_author, because Name_matched_author contains the author based on the matched name, not the author in the original string, so it's not strictly from the original name

View differences:

inputs/.TNRS/tnrs/map.csv
5 5 
Name_matched,scientificName,,
6 6 
Name_matched_rank,taxonRank,,
7 7 
Name_score,OMIT,,
8 
Name_matched_author,scientificNameAuthorship,,
8 
Name_matched_author,OMIT,,"Contains author based on matched name, not author in original string, so not strictly from the original name"
9 9 
Name_matched_url,OMIT,,
10 
Author_matched,OMIT,,Provided less often than Name_matched_author
10 
Author_matched,scientificNameAuthorship,,
11 11 
Author_score,OMIT,,
12 12 
Family_matched,family,,Contains any family in original string (uncommon)
13 13 
Family_score,OMIT,,
inputs/.TNRS/tnrs/VegBIEN.csv
11 11 
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
12 12 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
13 13 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
14 
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
15 
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author,
14 
Author_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
15 
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author,
16 16 
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/author,
17 17 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/family,
18 18 
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
......
34 34 
Accepted_name_species,,** No non-empty join mapping for OMIT ** Also contains genus. Omitted because Accepted_name contains more info.
35 35 
Accepted_name_url,,** No non-empty join mapping for OMIT **
36 36 
Annotations,,** No non-empty join mapping for OMIT **
37 
Author_matched,,** No non-empty join mapping for OMIT ** Provided less often than Name_matched_author
38 37 
Author_score,,** No non-empty join mapping for OMIT **
39 38 
Family_score,,** No non-empty join mapping for OMIT **
40 39 
Genus_score,,** No non-empty join mapping for OMIT **
......
43 42 
Infraspecific_epithet_score,,** No non-empty join mapping for OMIT **
44 43 
Infraspecific_rank_2,,** No non-empty join mapping for OMIT ** Need to parse the rank
45 44 
Name_matched_accepted_family,,"** No non-empty join mapping for OMIT ** Contains family based on genus, not family in original string, so not strictly from the original name"
45 
Name_matched_author,,"** No non-empty join mapping for OMIT ** Contains author based on matched name, not author in original string, so not strictly from the original name"
46 46 
Name_matched_url,,** No non-empty join mapping for OMIT **
47 47 
Name_number,,** No non-empty join mapping for OMIT **
48 48 
Name_score,,** No non-empty join mapping for OMIT **
inputs/.TNRS/tnrs/test.xml.ref
42 42 
                                                            </2>
43 43 
                                                        </_alt>
44 44 
                                                    </1>
45 
                                                    <2>$Name_matched_author</2>
45 
                                                    <2>$Author_matched</2>
46 46 
                                                </_join_words>
47 47 
                                            </2>
48 48 
                                        </_alt>
49 49 
                                    </identifyingtaxonomicname>
50 
                                    <author>$Name_matched_author</author>
50 
                                    <author>$Author_matched</author>
51 51 
                                    <canon_taxonpath_id>
52 52 
                                        <taxonpath>
53 53 
                                            <canon_taxonpath_id>0</canon_taxonpath_id>
inputs/.TNRS/tnrs/new_terms.csv
4 4 
Name_matched,scientificName,,
5 5 
Name_matched_rank,taxonRank,,
6 6 
Name_score,OMIT,,
7 
Name_matched_author,scientificNameAuthorship,,
7 
Name_matched_author,OMIT,,"Contains author based on matched name, not author in original string, so not strictly from the original name"
8 8 
Name_matched_url,OMIT,,
9 
Author_matched,OMIT,,Provided less often than Name_matched_author
9 
Author_matched,scientificNameAuthorship,,
10 10 
Author_score,OMIT,,
11 11 
Family_matched,family,,Contains any family in original string (uncommon)
12 12 
Family_score,OMIT,,

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