Revision 5193
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 12 | 12 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 13 | 13 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
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| 14 | 14 |
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
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| 15 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/author, |
|
| 16 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/family, |
|
| 17 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
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| 18 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 19 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 20 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 21 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 22 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/taxonomicname, |
|
| 15 | 23 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author,Contains author based on matched name |
| 16 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/author, |
|
| 17 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/family, |
|
| 18 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 19 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 20 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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| 21 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 22 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 23 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicname, |
|
| 24 | 24 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,Contains family based on matched name |
| 25 | 25 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 26 | 26 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 47 | 47 |
</2> |
| 48 | 48 |
</_alt> |
| 49 | 49 |
</identifyingtaxonomicname> |
| 50 |
<_set_canon_taxonpath> |
|
| 51 |
<canon_taxonpath_id> |
|
| 52 |
<taxonpath> |
|
| 53 |
<author>$Accepted_name_author</author> |
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| 54 |
<family>$Accepted_name_family</family> |
|
| 55 |
<identifyingtaxonomicname> |
|
| 56 |
<_join_words> |
|
| 57 |
<1> |
|
| 58 |
<_alt> |
|
| 59 |
<1>$Accepted_name</1> |
|
| 60 |
<2>$Accepted_name_family</2> |
|
| 61 |
</_alt> |
|
| 62 |
</1> |
|
| 63 |
<2>$Accepted_name_author</2> |
|
| 64 |
</_join_words> |
|
| 65 |
</identifyingtaxonomicname> |
|
| 66 |
<taxonomicname>$Accepted_name</taxonomicname> |
|
| 67 |
</taxonpath> |
|
| 68 |
</canon_taxonpath_id> |
|
| 69 |
</_set_canon_taxonpath> |
|
| 50 | 70 |
<author>$Name_matched_author</author> |
| 51 |
<canon_taxonpath_id> |
|
| 52 |
<taxonpath> |
|
| 53 |
<canon_taxonpath_id>0</canon_taxonpath_id> |
|
| 54 |
<author>$Accepted_name_author</author> |
|
| 55 |
<family>$Accepted_name_family</family> |
|
| 56 |
<identifyingtaxonomicname> |
|
| 57 |
<_join_words> |
|
| 58 |
<1> |
|
| 59 |
<_alt> |
|
| 60 |
<1>$Accepted_name</1> |
|
| 61 |
<2>$Accepted_name_family</2> |
|
| 62 |
</_alt> |
|
| 63 |
</1> |
|
| 64 |
<2>$Accepted_name_author</2> |
|
| 65 |
</_join_words> |
|
| 66 |
</identifyingtaxonomicname> |
|
| 67 |
<taxonomicname>$Accepted_name</taxonomicname> |
|
| 68 |
</taxonpath> |
|
| 69 |
</canon_taxonpath_id> |
|
| 70 | 71 |
<family>$Name_matched_accepted_family</family> |
| 71 | 72 |
<genus>$Genus_matched</genus> |
| 72 | 73 |
<species>$Specific_epithet_matched</species> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 145 | 145 |
forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2",
|
| 146 | 146 |
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2",
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| 147 | 147 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
| 148 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/author, |
|
| 149 |
acceptedClass,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/class, |
|
| 150 |
acceptedCultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/cultivar, |
|
| 151 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/family, |
|
| 152 |
acceptedForma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/forma, |
|
| 153 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/genus, |
|
| 154 |
acceptedScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/1, |
|
| 155 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 156 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 157 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 158 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3, |
|
| 159 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 160 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 161 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 162 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 163 |
acceptedVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
|
| 164 |
acceptedForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2", |
|
| 165 |
acceptedCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2", |
|
| 166 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 167 |
acceptedKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/kingdom, |
|
| 168 |
acceptedOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/order, |
|
| 169 |
acceptedPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/phylum, |
|
| 170 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/species, |
|
| 171 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/subspecies/_alt/1, |
|
| 172 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 173 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 174 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/subspecies/_alt/2/_join_words/2, |
|
| 175 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/taxonomicname, |
|
| 176 |
acceptedVariety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/variety, |
|
| 148 | 177 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author, |
| 149 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/author, |
|
| 150 |
acceptedClass,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/class, |
|
| 151 |
acceptedCultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/cultivar, |
|
| 152 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/family, |
|
| 153 |
acceptedForma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/forma, |
|
| 154 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/genus, |
|
| 155 |
acceptedScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/1, |
|
| 156 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 157 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 158 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 159 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3, |
|
| 160 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 161 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 162 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 163 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 164 |
acceptedVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
|
| 165 |
acceptedForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2", |
|
| 166 |
acceptedCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2", |
|
| 167 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 168 |
acceptedKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/kingdom, |
|
| 169 |
acceptedOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/order, |
|
| 170 |
acceptedPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/phylum, |
|
| 171 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/species, |
|
| 172 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/1, |
|
| 173 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 174 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 175 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/2, |
|
| 176 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicname, |
|
| 177 |
acceptedVariety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/variety, |
|
| 178 | 178 |
class,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/class, |
| 179 | 179 |
cultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/cultivar, |
| 180 | 180 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 145 | 145 |
forma,"//*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath}/identifyingtaxonomicname",
|
| 146 | 146 |
cultivar,"//*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath}/identifyingtaxonomicname",
|
| 147 | 147 |
scientificNameAuthorship,"//*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath}/identifyingtaxonomicname",
|
| 148 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/author, |
|
| 149 |
acceptedClass,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/class, |
|
| 150 |
acceptedCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/cultivar, |
|
| 151 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/family, |
|
| 152 |
acceptedForma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/forma, |
|
| 153 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/genus, |
|
| 154 |
acceptedScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 155 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 156 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 157 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 158 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 159 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 160 |
acceptedInfraspecificEpithet,"//*_id/taxonpath/taxonpath/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 161 |
acceptedTaxonRank,"//*_id/taxonpath/taxonpath/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 162 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 163 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 164 |
acceptedForma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 165 |
acceptedCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 166 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/identifyingtaxonomicname, |
|
| 167 |
acceptedKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/kingdom, |
|
| 168 |
acceptedOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/order, |
|
| 169 |
acceptedPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/phylum, |
|
| 170 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/species, |
|
| 171 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/subspecies, |
|
| 172 |
acceptedInfraspecificEpithet,"//*_id/taxonpath/taxonpath/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 173 |
acceptedTaxonRank,"//*_id/taxonpath/taxonpath/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 174 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/subspecies, |
|
| 175 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/taxonomicname, |
|
| 176 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/taxonpath/variety, |
|
| 148 | 177 |
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/author, |
| 149 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/author, |
|
| 150 |
acceptedClass,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/class, |
|
| 151 |
acceptedCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/cultivar, |
|
| 152 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/family, |
|
| 153 |
acceptedForma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/forma, |
|
| 154 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/genus, |
|
| 155 |
acceptedScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 156 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 157 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 158 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 159 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 160 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 161 |
acceptedInfraspecificEpithet,"//taxonpath/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 162 |
acceptedTaxonRank,"//taxonpath/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 163 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 164 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 165 |
acceptedForma,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 166 |
acceptedCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 167 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname, |
|
| 168 |
acceptedKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/kingdom, |
|
| 169 |
acceptedOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/order, |
|
| 170 |
acceptedPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/phylum, |
|
| 171 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/species, |
|
| 172 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/subspecies, |
|
| 173 |
acceptedInfraspecificEpithet,"//taxonpath/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 174 |
acceptedTaxonRank,"//taxonpath/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 175 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/subspecies, |
|
| 176 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/taxonomicname, |
|
| 177 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/canon_taxonpath_id/taxonpath/variety, |
|
| 178 | 178 |
class,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/class, |
| 179 | 179 |
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/cultivar, |
| 180 | 180 |
family,//taxonoccurrence/taxondetermination[]/*_id/taxonpath/family, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: accepted taxonomic terms: Use new _set_canon_taxonpath() to set the canon_taxonpath_id after the taxonpath has been inserted, so that if the taxonpath is an accepted name (scrubs to itself), it will link up to the just-inserted taxonpath with the taxonomic ranks parsed out, rather than to a new taxonpath containing only the few taxonomic ranks of the accepted name that TNRS provides. In particular, this (together with the tnrs_accepted_names sorting index on TNRS.tnrs) ensures that an accepted name is imported with its genus and species parsed out by TNRS instead of concatenated together in the Accepted_name_species field (genus+species). This enables the individual taxonomic ranks to be used in constructing the leaves of the tree of life (the taxon table).