Revision 5193
Added by Aaron Marcuse-Kubitza about 12 years ago
| VegBIEN.csv | ||
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| 12 | 12 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
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| 13 | 13 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
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| 14 | 14 |
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
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| 15 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/author, |
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| 16 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/family, |
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| 17 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
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| 18 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
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Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/identifyingtaxonomicname/_alt/2/_join_words/2, |
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| 21 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_set_canon_taxonpath/canon_taxonpath_id/taxonpath/taxonomicname, |
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| 15 | 23 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author,Contains author based on matched name |
| 16 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/author, |
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| 17 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/family, |
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| 18 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
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| 19 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
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Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/identifyingtaxonomicname/_alt/2/_join_words/2, |
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Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
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Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/canon_taxonpath_id/taxonpath:[canon_taxonpath_id=0]/taxonomicname, |
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| 24 | 24 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,Contains family based on matched name |
| 25 | 25 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus, |
| 26 | 26 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: accepted taxonomic terms: Use new _set_canon_taxonpath() to set the canon_taxonpath_id after the taxonpath has been inserted, so that if the taxonpath is an accepted name (scrubs to itself), it will link up to the just-inserted taxonpath with the taxonomic ranks parsed out, rather than to a new taxonpath containing only the few taxonomic ranks of the accepted name that TNRS provides. In particular, this (together with the tnrs_accepted_names sorting index on TNRS.tnrs) ensures that an accepted name is imported with its genus and species parsed out by TNRS instead of concatenated together in the Accepted_name_species field (genus+species). This enables the individual taxonomic ranks to be used in constructing the leaves of the tree of life (the taxon table).