Revision 5193
Added by Aaron Marcuse-Kubitza about 12 years ago
| test.xml.ref | ||
|---|---|---|
| 47 | 47 |
</2> |
| 48 | 48 |
</_alt> |
| 49 | 49 |
</identifyingtaxonomicname> |
| 50 |
<_set_canon_taxonpath> |
|
| 51 |
<canon_taxonpath_id> |
|
| 52 |
<taxonpath> |
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<author>$Accepted_name_author</author> |
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<family>$Accepted_name_family</family> |
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<identifyingtaxonomicname> |
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<_join_words> |
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<1> |
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<_alt> |
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<1>$Accepted_name</1> |
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<2>$Accepted_name_family</2> |
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</_alt> |
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</1> |
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<2>$Accepted_name_author</2> |
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</_join_words> |
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</identifyingtaxonomicname> |
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<taxonomicname>$Accepted_name</taxonomicname> |
|
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</taxonpath> |
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</canon_taxonpath_id> |
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</_set_canon_taxonpath> |
|
| 50 | 70 |
<author>$Name_matched_author</author> |
| 51 |
<canon_taxonpath_id> |
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<taxonpath> |
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<canon_taxonpath_id>0</canon_taxonpath_id> |
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<author>$Accepted_name_author</author> |
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<family>$Accepted_name_family</family> |
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<identifyingtaxonomicname> |
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<_join_words> |
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<1> |
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<_alt> |
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<1>$Accepted_name</1> |
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<2>$Accepted_name_family</2> |
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</_alt> |
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</1> |
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<2>$Accepted_name_author</2> |
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</_join_words> |
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| 66 |
</identifyingtaxonomicname> |
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<taxonomicname>$Accepted_name</taxonomicname> |
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</taxonpath> |
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</canon_taxonpath_id> |
|
| 70 | 71 |
<family>$Name_matched_accepted_family</family> |
| 71 | 72 |
<genus>$Genus_matched</genus> |
| 72 | 73 |
<species>$Specific_epithet_matched</species> |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: accepted taxonomic terms: Use new _set_canon_taxonpath() to set the canon_taxonpath_id after the taxonpath has been inserted, so that if the taxonpath is an accepted name (scrubs to itself), it will link up to the just-inserted taxonpath with the taxonomic ranks parsed out, rather than to a new taxonpath containing only the few taxonomic ranks of the accepted name that TNRS provides. In particular, this (together with the tnrs_accepted_names sorting index on TNRS.tnrs) ensures that an accepted name is imported with its genus and species parsed out by TNRS instead of concatenated together in the Accepted_name_species field (genus+species). This enables the individual taxonomic ranks to be used in constructing the leaves of the tree of life (the taxon table).