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Revision 5197

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Omit Infraspecific_rank because Name_matched_rank contains the unabbreviated rank and is provided more often

View differences:

inputs/.TNRS/tnrs/map.csv
16 16 
Genus_score,OMIT,,
17 17 
Specific_epithet_matched,specificEpithet,,
18 18 
Specific_epithet_score,OMIT,,
19 
Infraspecific_rank,taxonRank,,
19 
Infraspecific_rank,OMIT,,Omitted because Name_matched_rank contains the unabbreviated rank and is provided more often.
20 20 
Infraspecific_epithet_matched,infraspecificEpithet,,
21 21 
Infraspecific_epithet_score,OMIT,,
22 22 
Infraspecific_rank_2,OMIT,,Need to parse the rank
inputs/.TNRS/tnrs/VegBIEN.csv
4 4 
Accepted_name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/cond/_exists",
5 5 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=infraspecies]/taxonname",
6 6 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=infraspecies]/verbatimrank/_if[@name=""if has infraspecificEpithet""]/cond",
7 
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=infraspecies]/verbatimrank/_if[@name=""if has infraspecificEpithet""]/then",
8 7 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=infraspecies]/verbatimrank/_if[@name=""if has infraspecificEpithet""]/then",
9 8 
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,infraspecies,subspecies,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=species]/author_id/party/surname",Contains author based on matched name
10 9 
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,infraspecies,subspecies,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=species]/taxonname",
......
16 15 
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
17 16 
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3",
18 17 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
19 
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
20 18 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
21 19 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
22 20 
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
......
33 31 
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
34 32 
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
35 33 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
36 
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
37 34 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
38 35 
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/2,
39 36 
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/taxonomicname,
......
50 47 
Infraspecific_epithet_2_matched,,** No non-empty join mapping for OMIT ** Need to parse the rank
51 48 
Infraspecific_epithet_2_score,,** No non-empty join mapping for OMIT **
52 49 
Infraspecific_epithet_score,,** No non-empty join mapping for OMIT **
50 
Infraspecific_rank,,** No non-empty join mapping for OMIT ** Omitted because Name_matched_rank contains the unabbreviated rank and is provided more often.
53 51 
Infraspecific_rank_2,,** No non-empty join mapping for OMIT ** Need to parse the rank
54 52 
Name_matched_url,,** No non-empty join mapping for OMIT **
55 53 
Name_number,,** No non-empty join mapping for OMIT **
inputs/.TNRS/tnrs/test.xml.ref
25 25 
                                                                    <verbatimrank>
26 26 
                                                                        <_if name="if has infraspecificEpithet">
27 27 
                                                                            <cond>$Infraspecific_epithet_matched</cond>
28 
                                                                            <then>
29 
                                                                                <_alt>
30 
                                                                                    <0>$Infraspecific_rank</0>
31 
                                                                                    <1>$Name_matched_rank</1>
32 
                                                                                </_alt>
33 
                                                                            </then>
28 
                                                                            <then>$Name_matched_rank</then>
34 29 
                                                                        </_if>
35 30 
                                                                    </verbatimrank>
36 31 
                                                                    <parent_id>
......
83 78 
                                                                            <1>
84 79 
                                                                                <_if name="if has infraspecificEpithet">
85 80 
                                                                                    <cond>$Infraspecific_epithet_matched</cond>
86 
                                                                                    <then>
87 
                                                                                        <_alt>
88 
                                                                                            <0>$Infraspecific_rank</0>
89 
                                                                                            <1>$Name_matched_rank</1>
90 
                                                                                        </_alt>
91 
                                                                                    </then>
81 
                                                                                    <then>$Name_matched_rank</then>
92 82 
                                                                                </_if>
93 83 
                                                                            </1>
94 84 
                                                                            <2>$Infraspecific_epithet_matched</2>
......
132 122 
                                            <1>
133 123 
                                                <_if name="if has infraspecificEpithet">
134 124 
                                                    <cond>$Infraspecific_epithet_matched</cond>
135 
                                                    <then>
136 
                                                        <_alt>
137 
                                                            <0>$Infraspecific_rank</0>
138 
                                                            <1>$Name_matched_rank</1>
139 
                                                        </_alt>
140 
                                                    </then>
125 
                                                    <then>$Name_matched_rank</then>
141 126 
                                                </_if>
142 127 
                                            </1>
143 128 
                                            <2>$Infraspecific_epithet_matched</2>
inputs/.TNRS/tnrs/new_terms.csv
15 15 
Genus_score,OMIT,,
16 16 
Specific_epithet_matched,specificEpithet,,
17 17 
Specific_epithet_score,OMIT,,
18 
Infraspecific_rank,taxonRank,,
18 
Infraspecific_rank,OMIT,,Omitted because Name_matched_rank contains the unabbreviated rank and is provided more often.
19 19 
Infraspecific_epithet_matched,infraspecificEpithet,,
20 20 
Infraspecific_epithet_score,OMIT,,
21 21 
Infraspecific_rank_2,OMIT,,Need to parse the rank

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