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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5172 about 12 years Aaron Marcuse-Kubitza import_all: Use new dedicated cleanup make targ...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5202 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Mapped morphospecies
  lib 5192 about 12 years Aaron Marcuse-Kubitza sql_io.py: put_table(): Fixed bug where row_ct_...
  mappings 5202 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Mapped morphospecies
  schemas 5200 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonpath: Added morphospe...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 over 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 11.3 KB 5040 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: Starting column-based ...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5202 10/03/2012 08:11 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Mapped morphospecies

5201 10/03/2012 08:08 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Added morphospecies

5200 10/03/2012 08:04 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonpath: Added morphospecies

5199 10/03/2012 07:43 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/test.xml.ref: Updated for latest TNRS output

5198 10/03/2012 06:40 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/map.csv: Infraspecific_rank_2, Infraspecific_epithet_2_*: Mapped to UNUSED because they do not appear to be provided by TNRS (it just puts additional infraspecific names in Unmatched_terms)

5197 10/03/2012 06:34 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/map.csv: Omit Infraspecific_rank because Name_matched_rank contains the unabbreviated rank and is provided more often

5196 10/03/2012 06:29 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also map TNRS-parsed infraspecificEpithet (Infraspecific_epithet_matched) to taxon at the infraspecies rank

5195 10/03/2012 06:07 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also map TNRS-parsed taxonomic ranks to the tree of life in the taxon table

5194 10/03/2012 05:18 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxon: Added comment that this table stores the tree of life

5193 10/03/2012 05:00 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: accepted taxonomic terms: Use new _set_canon_taxonpath() to set the canon_taxonpath_id after the taxonpath has been inserted, so that if the taxonpath is an accepted name (scrubs to itself), it will link up to the just-inserted taxonpath with the taxonomic ranks parsed out, rather than to a new taxonpath containing only the few taxonomic ranks of the accepted name that TNRS provides. In particular, this (together with the tnrs_accepted_names sorting index on TNRS.tnrs) ensures that an accepted name is imported with its genus and species parsed out by TNRS instead of concatenated together in the Accepted_name_species field (genus+species). This enables the individual taxonomic ranks to be used in constructing the leaves of the tree of life (the taxon table).

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