Project

General

Profile

« Previous | Next » 

Revision 5203

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Mapped Unmatched_terms to morphospecies because the morphospecies is what's left once named ranks are matched

View differences:

inputs/.TNRS/tnrs/map.csv
23 23 
Infraspecific_epithet_2_matched,UNUSED,,
24 24 
Infraspecific_epithet_2_score,UNUSED,,
25 25 
Annotations,OMIT,,
26 
Unmatched_terms,OMIT,,
26 
Unmatched_terms,morphospecies,,
27 27 
Taxonomic_status,taxonomicStatus,,
28 28 
Accepted_name,acceptedScientificName,,
29 29 
Accepted_name_author,acceptedScientificNameAuthorship,,
inputs/.TNRS/tnrs/VegBIEN.csv
14 14 
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",Contains family based on matched name
15 15 
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
16 16 
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
17 
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/2",
17 18 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
18 19 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
19 20 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonpath_id/taxonpath:[datasource_id/party/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
......
29 30 
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/author,Contains author based on matched name
30 31 
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/family,Contains family based on matched name
31 32 
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/genus,
33 
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/morphospecies,
32 34 
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/species,
33 35 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
34 36 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonpath/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
......
57 59 
Source,,** No non-empty join mapping for OMIT **
58 60 
Specific_epithet_score,,** No non-empty join mapping for OMIT **
59 61 
Taxonomic_status,,** No join mapping for taxonomicStatus **
60 
Unmatched_terms,,** No non-empty join mapping for OMIT **
61 62 
Warnings,,** No non-empty join mapping for OMIT **
inputs/.TNRS/tnrs/test.xml.ref
72 72 
                                                                <_join_words>
73 73 
                                                                    <1>$Name_matched_accepted_family</1>
74 74 
                                                                    <2>$Genus_matched</2>
75 
                                                                    <3>$Specific_epithet_matched</3>
75 
                                                                    <3>
76 
                                                                        <_join_words>
77 
                                                                            <1>$Specific_epithet_matched</1>
78 
                                                                            <2>$Unmatched_terms</2>
79 
                                                                        </_join_words>
80 
                                                                    </3>
76 81 
                                                                    <5>
77 82 
                                                                        <_join_words>
78 83 
                                                                            <1>
......
116 121 
                                    <author>$Name_matched_author</author>
117 122 
                                    <family>$Name_matched_accepted_family</family>
118 123 
                                    <genus>$Genus_matched</genus>
124 
                                    <morphospecies>$Unmatched_terms</morphospecies>
119 125 
                                    <species>$Specific_epithet_matched</species>
120 126 
                                    <subspecies>
121 127 
                                        <_join_words>
inputs/.TNRS/tnrs/new_terms.csv
22 22 
Infraspecific_epithet_2_matched,UNUSED,,
23 23 
Infraspecific_epithet_2_score,UNUSED,,
24 24 
Annotations,OMIT,,
25 
Unmatched_terms,OMIT,,
25 
Unmatched_terms,morphospecies,,
26 26 
Accepted_name,acceptedScientificName,,
27 27 
Accepted_name_author,acceptedScientificNameAuthorship,,
28 28 
Accepted_name_rank,acceptedTaxonRank,,

Also available in: Unified diff