REMIB,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments

accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]

[1] Using the following query:

-----

SELECT acronym, accession_number, count(*)

FROM ""REMIB"".""Specimen""

GROUP BY acronym, accession_number

HAVING count(*) > 1

-----"

acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",

accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]

[1] Using the following query:

-----

SELECT acronym, accession_number, count(*)

FROM ""REMIB"".""Specimen""

GROUP BY acronym, accession_number

HAVING count(*) > 1

-----"

lat_deg,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value",

long_deg,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value",

coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",

coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",

coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",

accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]

[1] Using the following query:

-----

SELECT acronym, accession_number, count(*)

FROM ""REMIB"".""Specimen""

GROUP BY acronym, accession_number

HAVING count(*) > 1

-----"

acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname,

specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,infraspecies,subspecies,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=species]/taxonname",

genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,infraspecies,subspecies,species,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=genus]/taxonname",

family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has accepted name""]/then/taxon_id/_forEach:[in:[cultivar,forma,variety,infraspecies,subspecies,species,genus,],do=""taxon[rank=_val]/parent_id""]/taxon[rank=family]/taxonname",

family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[datasource_id/party:[datasource_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",

genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[datasource_id/party:[datasource_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",

specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has accepted name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[datasource_id/party:[datasource_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",

family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,

genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,

specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,

collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,

accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]

[1] Using the following query:

-----

SELECT acronym, accession_number, count(*)

FROM ""REMIB"".""Specimen""

GROUP BY acronym, accession_number

HAVING count(*) > 1

-----"

locality,/location/locationnarrative/_merge/1,

habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"

country,/location/locationplace/*_id/placepath/country,

county,/location/locationplace/*_id/placepath/county,

state,/location/locationplace/*_id/placepath/stateprovince,

lat_min,,** No join mapping for *lat_min ** 

lat_sec,,** No join mapping for *lat_sec ** 

long_min,,** No join mapping for *long_min ** 

long_sec,,** No join mapping for *long_sec ** 

preparation,,** No join mapping for preparations **