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1
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all: _always plots
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2
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./join VegX VegBIEN
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3
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./review
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4
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5
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.SUFFIXES:
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6
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7
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_always:
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8
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.PHONY: _always
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9
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10
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all = $(wildcard for_review/*) $(filter-out VegX-%,$(wildcard *-VegBIEN.*.csv))
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11
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12
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clean: _always
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13
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$(RM) $(all)
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14
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15
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remake: _always clean all ;
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16
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17
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#####
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18
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19
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bin = ../bin
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20
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chRoot = $(bin)/ch_root <$< >$@
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21
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22
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VegX-VegBIEN.organisms.csv: _always
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23
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$(bin)/in_place $@ $(bin)/sort 1 0
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24
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25
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#####
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26
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27
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vegxVegbienGenMaps := VegX-VegBIEN.plots.csv VegX-VegBIEN.stems.csv
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28
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29
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plots: _always $(vegxVegbienGenMaps) ;
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30
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31
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all += $(vegxVegbienGenMaps)
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32
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33
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VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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34
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env \
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35
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left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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36
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left_out_root='/*s/plotObservation' \
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37
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right_in_root='/taxonoccurrence/*_id/locationevent' \
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38
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right_out_root='/locationevent' \
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39
|
$(chRoot)
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|
40
|
|
|
41
|
VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
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42
|
env \
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43
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left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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44
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left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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45
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right_in_root='/taxonoccurrence/aggregateoccurrence/individualplant/stem' \
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46
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right_out_root='/stem' \
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47
|
$(chRoot)
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