Revision 5259
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname, |
| 39 | 39 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 40 | 40 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 41 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicnamewithauthor, |
|
| 41 | 42 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 42 | 43 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 43 | 44 |
Accepted_name_lsid,,** No non-empty join mapping for OMIT ** |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 127 | 127 |
<taxonconcept fkey="canon_taxonconcept_id"> |
| 128 | 128 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
| 129 | 129 |
<morphospecies>$Unmatched_terms</morphospecies> |
| 130 |
<taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor> |
|
| 130 | 131 |
</taxonconcept> |
| 131 | 132 |
<taxonomicname>$Name_matched</taxonomicname> |
| 132 | 133 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 209 | 209 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
| 210 | 210 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 211 | 211 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
| 212 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/author, |
|
| 213 |
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/class, |
|
| 214 |
verbatimCultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/cultivar, |
|
| 215 |
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/family, |
|
| 216 |
verbatimForma,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/forma, |
|
| 217 |
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/genus, |
|
| 212 | 218 |
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname, |
| 219 |
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/kingdom, |
|
| 213 | 220 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 214 | 221 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 222 |
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/order, |
|
| 223 |
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/phylum, |
|
| 224 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species, |
|
| 225 |
verbatimSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/1, |
|
| 226 |
verbatimInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 227 |
verbatimTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 228 |
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/2, |
|
| 229 |
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicname, |
|
| 230 |
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicnamewithauthor, |
|
| 231 |
verbatimVariety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/variety, |
|
| 232 |
verbatimTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/verbatimrank, |
|
| 215 | 233 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 216 | 234 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 217 | 235 |
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/variety, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 209 | 209 |
infraspecificEpithet,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
| 210 | 210 |
taxonRank,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
| 211 | 211 |
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/subspecies, |
| 212 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/author, |
|
| 213 |
verbatimClass,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/class, |
|
| 214 |
verbatimCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/cultivar, |
|
| 215 |
verbatimFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/family, |
|
| 216 |
verbatimForma,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/forma, |
|
| 217 |
verbatimGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/genus, |
|
| 212 | 218 |
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname, |
| 219 |
verbatimKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/kingdom, |
|
| 213 | 220 |
verbatimScientificNameWithAuthorship,"//taxonconcept/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 214 | 221 |
morphospecies,"//taxonconcept/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 222 |
verbatimOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/order, |
|
| 223 |
verbatimPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum, |
|
| 224 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species, |
|
| 225 |
verbatimSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
|
| 226 |
verbatimInfraspecificEpithet,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 227 |
verbatimTaxonRank,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 228 |
verbatimInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
|
| 229 |
verbatimScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonomicname, |
|
| 230 |
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonomicnamewithauthor, |
|
| 231 |
verbatimVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/variety, |
|
| 232 |
verbatimTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/verbatimrank, |
|
| 215 | 233 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonomicname, |
| 216 | 234 |
scientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 217 | 235 |
variety,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/variety, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Mapped verbatim* taxonomic terms to the TNRS input taxonconcept