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Revision 5260

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Mapped terms matched in the original string (rather than deduced from the matched taxonconcept) to new verbatim* taxonomic terms

View differences:

inputs/.TNRS/tnrs/map.csv
7 7 
Name_score,OMIT,,
8 8 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
9 9 
Name_matched_url,OMIT,,
10 
Author_matched,OMIT,,Contains author in original string. Omitted because Name_matched_author provided more often.
10 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
11 11 
Author_score,OMIT,,
12 
Family_matched,OMIT,,Contains family in original string (uncommon). Omitted because Name_matched_accepted_family provided more often.
12 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
13 13 
Family_score,OMIT,,
14 14 
Name_matched_accepted_family,family,,Contains family based on matched name
15 15 
Genus_matched,genus,,
16 16 
Genus_score,OMIT,,
17 17 
Specific_epithet_matched,specificEpithet,,
18 18 
Specific_epithet_score,OMIT,,
19 
Infraspecific_rank,OMIT,,Omitted because Name_matched_rank contains the unabbreviated rank and is provided more often.
19 
Infraspecific_rank,verbatimTaxonRank,,
20 20 
Infraspecific_epithet_matched,infraspecificEpithet,,
21 21 
Infraspecific_epithet_score,OMIT,,
22 22 
Infraspecific_rank_2,UNUSED,,
inputs/.TNRS/tnrs/VegBIEN.csv
35 35 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
36 36 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
37 37 
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2,
38 
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/author,Contains author in original string
39 
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/family,Contains family in original string (uncommon)
38 40 
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname,
39 41 
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
40 42 
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/then",
43 
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
41 44 
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicnamewithauthor,
45 
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/verbatimrank,
42 46 
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
43 47 
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank,
44 48 
Accepted_name_lsid,,** No non-empty join mapping for OMIT **
45 49 
Accepted_name_species,,** No non-empty join mapping for OMIT ** Also contains genus. Omitted because Accepted_name contains more info.
46 50 
Accepted_name_url,,** No non-empty join mapping for OMIT **
47 51 
Annotations,,** No non-empty join mapping for OMIT **
48 
Author_matched,,** No non-empty join mapping for OMIT ** Contains author in original string. Omitted because Name_matched_author provided more often.
49 52 
Author_score,,** No non-empty join mapping for OMIT **
50 
Family_matched,,** No non-empty join mapping for OMIT ** Contains family in original string (uncommon). Omitted because Name_matched_accepted_family provided more often.
51 53 
Family_score,,** No non-empty join mapping for OMIT **
52 54 
Genus_score,,** No non-empty join mapping for OMIT **
53 55 
Infraspecific_epithet_2_matched,,** No non-empty join mapping for UNUSED **
54 56 
Infraspecific_epithet_2_score,,** No non-empty join mapping for UNUSED **
55 57 
Infraspecific_epithet_score,,** No non-empty join mapping for OMIT **
56 
Infraspecific_rank,,** No non-empty join mapping for OMIT ** Omitted because Name_matched_rank contains the unabbreviated rank and is provided more often.
57 58 
Infraspecific_rank_2,,** No non-empty join mapping for UNUSED **
58 59 
Name_matched_url,,** No non-empty join mapping for OMIT **
59 60 
Name_number,,** No non-empty join mapping for OMIT **
inputs/.TNRS/tnrs/test.xml.ref
125 125 
                                        </_join_words>
126 126 
                                    </subspecies>
127 127 
                                    <taxonconcept fkey="canon_taxonconcept_id">
128 
                                        <author>$Author_matched</author>
129 
                                        <family>$Family_matched</family>
128 130 
                                        <identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname>
129 131 
                                        <morphospecies>$Unmatched_terms</morphospecies>
130 132 
                                        <taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor>
133 
                                        <verbatimrank>$Infraspecific_rank</verbatimrank>
131 134 
                                    </taxonconcept>
132 135 
                                    <taxonomicname>$Name_matched</taxonomicname>
133 136 
                                    <verbatimrank>$Name_matched_rank</verbatimrank>
inputs/.TNRS/tnrs/new_terms.csv
6 6 
Name_score,OMIT,,
7 7 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
8 8 
Name_matched_url,OMIT,,
9 
Author_matched,OMIT,,Contains author in original string. Omitted because Name_matched_author provided more often.
9 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
10 10 
Author_score,OMIT,,
11 
Family_matched,OMIT,,Contains family in original string (uncommon). Omitted because Name_matched_accepted_family provided more often.
11 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
12 12 
Family_score,OMIT,,
13 13 
Name_matched_accepted_family,family,,Contains family based on matched name
14 14 
Genus_matched,genus,,
15 15 
Genus_score,OMIT,,
16 16 
Specific_epithet_matched,specificEpithet,,
17 17 
Specific_epithet_score,OMIT,,
18 
Infraspecific_rank,OMIT,,Omitted because Name_matched_rank contains the unabbreviated rank and is provided more often.
18 
Infraspecific_rank,verbatimTaxonRank,,
19 19 
Infraspecific_epithet_matched,infraspecificEpithet,,
20 20 
Infraspecific_epithet_score,OMIT,,
21 21 
Infraspecific_rank_2,UNUSED,,

Also available in: Unified diff