Revision 5261
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/tnrs/map.csv | ||
|---|---|---|
| 2 | 2 |
Name_number,OMIT,, |
| 3 | 3 |
Name_submitted,verbatimScientificNameWithAuthorship,, |
| 4 | 4 |
Overall_score,OMIT,, |
| 5 |
Name_matched,verbatimScientificName,, |
|
| 5 | 6 |
Name_matched,scientificName,, |
| 6 | 7 |
Name_matched_rank,taxonRank,, |
| 7 | 8 |
Name_score,OMIT,, |
| ... | ... | |
| 12 | 13 |
Family_matched,verbatimFamily,,Contains family in original string (uncommon) |
| 13 | 14 |
Family_score,OMIT,, |
| 14 | 15 |
Name_matched_accepted_family,family,,Contains family based on matched name |
| 16 |
Genus_matched,verbatimGenus,, |
|
| 15 | 17 |
Genus_matched,genus,, |
| 16 | 18 |
Genus_score,OMIT,, |
| 19 |
Specific_epithet_matched,verbatimSpecificEpithet,, |
|
| 17 | 20 |
Specific_epithet_matched,specificEpithet,, |
| 18 | 21 |
Specific_epithet_score,OMIT,, |
| 19 | 22 |
Infraspecific_rank,verbatimTaxonRank,, |
| 23 |
Infraspecific_epithet_matched,verbatimInfraspecificEpithet,, |
|
| 20 | 24 |
Infraspecific_epithet_matched,infraspecificEpithet,, |
| 21 | 25 |
Infraspecific_epithet_score,OMIT,, |
| 22 | 26 |
Infraspecific_rank_2,UNUSED,, |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 37 | 37 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
| 38 | 38 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/author,Contains author in original string |
| 39 | 39 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/family,Contains family in original string (uncommon) |
| 40 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/genus, |
|
| 40 | 41 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname, |
| 41 | 42 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 42 | 43 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 44 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species, |
|
| 45 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 43 | 46 |
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 47 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/2, |
|
| 48 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicname, |
|
| 44 | 49 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicnamewithauthor, |
| 45 | 50 |
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/verbatimrank, |
| 46 | 51 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 127 | 127 |
<taxonconcept fkey="canon_taxonconcept_id"> |
| 128 | 128 |
<author>$Author_matched</author> |
| 129 | 129 |
<family>$Family_matched</family> |
| 130 |
<genus>$Genus_matched</genus> |
|
| 130 | 131 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
| 131 | 132 |
<morphospecies>$Unmatched_terms</morphospecies> |
| 133 |
<species>$Specific_epithet_matched</species> |
|
| 134 |
<subspecies> |
|
| 135 |
<_join_words> |
|
| 136 |
<1> |
|
| 137 |
<_if name="if has infraspecificEpithet"> |
|
| 138 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 139 |
<then>$Infraspecific_rank</then> |
|
| 140 |
</_if> |
|
| 141 |
</1> |
|
| 142 |
<2>$Infraspecific_epithet_matched</2> |
|
| 143 |
</_join_words> |
|
| 144 |
</subspecies> |
|
| 145 |
<taxonomicname>$Name_matched</taxonomicname> |
|
| 132 | 146 |
<taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor> |
| 133 | 147 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
| 134 | 148 |
</taxonconcept> |
| inputs/.TNRS/tnrs/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
Name_number,OMIT,, |
| 2 | 2 |
Name_submitted,verbatimScientificNameWithAuthorship,, |
| 3 | 3 |
Overall_score,OMIT,, |
| 4 |
Name_matched,verbatimScientificName,, |
|
| 4 | 5 |
Name_matched,scientificName,, |
| 5 | 6 |
Name_matched_rank,taxonRank,, |
| 6 | 7 |
Name_score,OMIT,, |
| ... | ... | |
| 11 | 12 |
Family_matched,verbatimFamily,,Contains family in original string (uncommon) |
| 12 | 13 |
Family_score,OMIT,, |
| 13 | 14 |
Name_matched_accepted_family,family,,Contains family based on matched name |
| 15 |
Genus_matched,verbatimGenus,, |
|
| 14 | 16 |
Genus_matched,genus,, |
| 15 | 17 |
Genus_score,OMIT,, |
| 18 |
Specific_epithet_matched,verbatimSpecificEpithet,, |
|
| 16 | 19 |
Specific_epithet_matched,specificEpithet,, |
| 17 | 20 |
Specific_epithet_score,OMIT,, |
| 18 | 21 |
Infraspecific_rank,verbatimTaxonRank,, |
| 22 |
Infraspecific_epithet_matched,verbatimInfraspecificEpithet,, |
|
| 19 | 23 |
Infraspecific_epithet_matched,infraspecificEpithet,, |
| 20 | 24 |
Infraspecific_epithet_score,OMIT,, |
| 21 | 25 |
Infraspecific_rank_2,UNUSED,, |
Also available in: Unified diff
inputs/.TNRS/tnrs/map.csv: Mapped *_matched terms that are both matched in the input name and which correspond to the matched taxonconcept (Genus_matched, Specific_epithet_matched, etc.) to both the input and matched taxonconcepts