Revision 5263
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 49 | 49 |
darwin:Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 50 | 50 |
darwin:Phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/phylum, |
| 51 | 51 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 52 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 52 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 53 | 53 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 54 | 54 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 55 | 55 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 54 | 54 |
Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 55 | 55 |
Phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/phylum, |
| 56 | 56 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 57 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 57 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 58 | 58 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 59 | 59 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 60 | 60 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 63 | 63 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 64 | 64 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 65 | 65 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 66 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 67 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1", |
|
| 68 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2", |
|
| 69 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 66 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 70 | 67 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 71 | 68 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank/_alt/1, |
| 72 | 69 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank/_alt/2, |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 119 | 119 |
<family>$family</family> |
| 120 | 120 |
<genus>$genus</genus> |
| 121 | 121 |
<species>$species</species> |
| 122 |
<subspecies> |
|
| 123 |
<_join_words> |
|
| 124 |
<1> |
|
| 125 |
<_if name="if has infraspecificEpithet"> |
|
| 126 |
<cond>$infraname</cond> |
|
| 127 |
<then> |
|
| 128 |
<_alt> |
|
| 129 |
<1>$usdaRank</1> |
|
| 130 |
<2>$infrarank</2> |
|
| 131 |
</_alt> |
|
| 132 |
</then> |
|
| 133 |
</_if> |
|
| 134 |
</1> |
|
| 135 |
<2>$infraname</2> |
|
| 136 |
</_join_words> |
|
| 137 |
</subspecies> |
|
| 122 |
<taxonname>$infraname</taxonname> |
|
| 138 | 123 |
<taxonomicname>$SciName</taxonomicname> |
| 139 | 124 |
<verbatimrank> |
| 140 | 125 |
<_alt> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 52 | 52 |
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 53 | 53 |
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/phylum, |
| 54 | 54 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 55 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 56 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 57 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 55 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 58 | 56 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 59 | 57 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 60 | 58 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 133 | 133 |
<order>$order</order> |
| 134 | 134 |
<phylum>$phylum</phylum> |
| 135 | 135 |
<species>$specificEpithet</species> |
| 136 |
<subspecies> |
|
| 137 |
<_join_words> |
|
| 138 |
<1> |
|
| 139 |
<_if name="if has infraspecificEpithet"> |
|
| 140 |
<cond>$infraspecificEpithet</cond> |
|
| 141 |
<then>$taxonRank</then> |
|
| 142 |
</_if> |
|
| 143 |
</1> |
|
| 144 |
<2>$infraspecificEpithet</2> |
|
| 145 |
</_join_words> |
|
| 146 |
</subspecies> |
|
| 136 |
<taxonname>$infraspecificEpithet</taxonname> |
|
| 147 | 137 |
<taxonomicnamewithauthor>$scientificName</taxonomicnamewithauthor> |
| 148 | 138 |
<verbatimrank>$taxonRank</verbatimrank> |
| 149 | 139 |
</taxonconcept> |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 82 | 82 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 83 | 83 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 84 | 84 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 85 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 86 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 87 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 85 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 88 | 86 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 89 | 87 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 90 | 88 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
| inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
|---|---|---|
| 184 | 184 |
<family>$family</family> |
| 185 | 185 |
<genus>$genus</genus> |
| 186 | 186 |
<species>$specific_epithet</species> |
| 187 |
<subspecies> |
|
| 188 |
<_join_words> |
|
| 189 |
<1> |
|
| 190 |
<_if name="if has infraspecificEpithet"> |
|
| 191 |
<cond>$infra_ep_1</cond> |
|
| 192 |
<then>$infra_rank_1</then> |
|
| 193 |
</_if> |
|
| 194 |
</1> |
|
| 195 |
<2>$infra_ep_1</2> |
|
| 196 |
</_join_words> |
|
| 197 |
</subspecies> |
|
| 187 |
<taxonname>$infra_ep_1</taxonname> |
|
| 198 | 188 |
<verbatimrank>$infra_rank_1</verbatimrank> |
| 199 | 189 |
</taxonconcept> |
| 200 | 190 |
</taxonconcept_id> |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 35 | 35 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 36 | 36 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 37 | 37 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 38 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 38 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 39 | 39 |
Description,,** No join mapping for *Description ** |
| 40 | 40 |
ExactDate,,** No join mapping for *ExactDate ** |
| 41 | 41 |
FamilyID,,** No join mapping for *FamilyID ** |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 21 | 21 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 22 | 22 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 23 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 23 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 24 | 24 |
Description,,** No join mapping for *Description ** |
| 25 | 25 |
FamilyID,,** No join mapping for *FamilyID ** |
| 26 | 26 |
FieldFamily,,** No join mapping for *FieldFamily ** |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 75 | 75 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 76 | 76 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 77 | 77 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 78 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 79 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 80 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 78 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 81 | 79 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 82 | 80 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 83 | 81 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 155 | 155 |
<family>$Family</family> |
| 156 | 156 |
<genus>$Genus</genus> |
| 157 | 157 |
<species>$Species</species> |
| 158 |
<subspecies> |
|
| 159 |
<_join_words> |
|
| 160 |
<1> |
|
| 161 |
<_if name="if has infraspecificEpithet"> |
|
| 162 |
<cond>$infra_ep_1</cond> |
|
| 163 |
<then>$infra_rank_1</then> |
|
| 164 |
</_if> |
|
| 165 |
</1> |
|
| 166 |
<2>$infra_ep_1</2> |
|
| 167 |
</_join_words> |
|
| 168 |
</subspecies> |
|
| 158 |
<taxonname>$infra_ep_1</taxonname> |
|
| 169 | 159 |
<verbatimrank>$infra_rank_1</verbatimrank> |
| 170 | 160 |
</taxonconcept> |
| 171 | 161 |
</taxonconcept_id> |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 23 | 23 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| 24 | 24 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 25 | 25 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2, |
| 26 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 27 | 26 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/taxonomicname, |
| 28 | 27 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/verbatimrank, |
| 29 | 28 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,Contains author based on matched name |
| 30 | 29 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,Contains family based on matched name |
| 31 | 30 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 32 | 31 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 33 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 34 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 35 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 36 | 32 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/author,Contains author in original string |
| 37 | 33 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/family,Contains family in original string (uncommon) |
| 38 | 34 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/genus, |
| 39 | 35 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname, |
| 40 | 36 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species, |
| 41 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 42 |
Infraspecific_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 43 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/2, |
|
| 44 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 45 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_if[@name=""if has verbatim name""]/then", |
|
| 37 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/1, |
|
| 38 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/2/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 39 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/2/_if[@name=""if has verbatim name""]/then", |
|
| 46 | 40 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicname, |
| 47 | 41 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicnamewithauthor, |
| 48 | 42 |
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/verbatimrank, |
| 49 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 50 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_if[@name=""if has verbatim name""]/else", |
|
| 43 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 44 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/2/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 45 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/2/_if[@name=""if has verbatim name""]/else", |
|
| 51 | 46 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 52 | 47 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 53 | 48 |
Accepted_name_lsid,,** No non-empty join mapping for OMIT ** |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 113 | 113 |
<family>$Name_matched_accepted_family</family> |
| 114 | 114 |
<genus>$Genus_matched</genus> |
| 115 | 115 |
<species>$Specific_epithet_matched</species> |
| 116 |
<subspecies> |
|
| 117 |
<_join_words> |
|
| 118 |
<1> |
|
| 119 |
<_if name="if has infraspecificEpithet"> |
|
| 120 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 121 |
<then>$Name_matched_rank</then> |
|
| 122 |
</_if> |
|
| 123 |
</1> |
|
| 124 |
<2>$Infraspecific_epithet_matched</2> |
|
| 125 |
</_join_words> |
|
| 126 |
</subspecies> |
|
| 127 | 116 |
<taxonconcept fkey="canon_taxonconcept_id"> |
| 128 | 117 |
<author>$Author_matched</author> |
| 129 | 118 |
<family>$Family_matched</family> |
| 130 | 119 |
<genus>$Genus_matched</genus> |
| 131 | 120 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
| 132 | 121 |
<species>$Specific_epithet_matched</species> |
| 133 |
<subspecies> |
|
| 134 |
<_join_words> |
|
| 135 |
<1> |
|
| 136 |
<_if name="if has infraspecificEpithet"> |
|
| 137 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 138 |
<then>$Infraspecific_rank</then> |
|
| 139 |
</_if> |
|
| 140 |
</1> |
|
| 141 |
<2>$Infraspecific_epithet_matched</2> |
|
| 142 |
</_join_words> |
|
| 143 |
</subspecies> |
|
| 144 |
<taxonname>$Unmatched_terms</taxonname> |
|
| 122 |
<taxonname> |
|
| 123 |
<_alt> |
|
| 124 |
<1>$Infraspecific_epithet_matched</1> |
|
| 125 |
<2>$Unmatched_terms</2> |
|
| 126 |
</_alt> |
|
| 127 |
</taxonname> |
|
| 145 | 128 |
<taxonomicname>$Name_matched</taxonomicname> |
| 146 | 129 |
<taxonomicnamewithauthor>$Name_submitted</taxonomicnamewithauthor> |
| 147 | 130 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
| 148 | 131 |
</taxonconcept> |
| 132 |
<taxonname>$Infraspecific_epithet_matched</taxonname> |
|
| 149 | 133 |
<taxonomicname>$Name_matched</taxonomicname> |
| 150 | 134 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
| 151 | 135 |
</taxonconcept> |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 56 | 56 |
Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 57 | 57 |
Phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/phylum, |
| 58 | 58 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 59 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 59 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 60 | 60 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 61 | 61 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor,Contains the binomial in addition to the authority |
| 62 | 62 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 37 | 37 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 38 | 38 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 39 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 40 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 39 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 41 | 40 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 42 | 41 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
| 43 | 42 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 99 | 99 |
<family>$Family</family> |
| 100 | 100 |
<genus>$Genus</genus> |
| 101 | 101 |
<species>$SpecificEpithet</species> |
| 102 |
<subspecies>$InfraspecificEpithet</subspecies>
|
|
| 102 |
<taxonname>$InfraspecificEpithet</taxonname>
|
|
| 103 | 103 |
<taxonomicname>$ScientificName</taxonomicname> |
| 104 | 104 |
</taxonconcept> |
| 105 | 105 |
</taxonconcept_id> |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 184 | 184 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 185 | 185 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 186 | 186 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 187 |
conceptual_darwin_2003_1_0_Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1, |
|
| 188 |
dwc_dwcore_InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 189 |
dwc_terms_infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 190 |
dwc_dwcore_InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 191 |
dwc_terms_infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 187 |
conceptual_darwin_2003_1_0_Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 188 |
dwc_dwcore_InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 189 |
dwc_terms_infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 192 | 190 |
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 193 | 191 |
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 194 | 192 |
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 416 | 416 |
<2>$dwc_terms_specificEpithet</2> |
| 417 | 417 |
</_alt> |
| 418 | 418 |
</species> |
| 419 |
<subspecies> |
|
| 419 |
<subspecies>$conceptual_darwin_2003_1_0_Subspecies</subspecies> |
|
| 420 |
<taxonname> |
|
| 420 | 421 |
<_alt> |
| 421 |
<1>$conceptual_darwin_2003_1_0_Subspecies</1> |
|
| 422 |
<2> |
|
| 423 |
<_alt> |
|
| 424 |
<0>$dwc_dwcore_InfraspecificEpithet</0> |
|
| 425 |
<1>$dwc_terms_infraspecificEpithet</1> |
|
| 426 |
</_alt> |
|
| 427 |
</2> |
|
| 422 |
<0>$dwc_dwcore_InfraspecificEpithet</0> |
|
| 423 |
<1>$dwc_terms_infraspecificEpithet</1> |
|
| 428 | 424 |
</_alt> |
| 429 |
</subspecies>
|
|
| 425 |
</taxonname>
|
|
| 430 | 426 |
<taxonomicname> |
| 431 | 427 |
<_alt> |
| 432 | 428 |
<0>$conceptual_darwin_2003_1_0_ScientificName</0> |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 42 | 42 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 43 | 43 |
Kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/kingdom, |
| 44 | 44 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 45 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 45 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 46 | 46 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 47 | 47 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 48 | 48 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
|---|---|---|
| 32 | 32 |
Kingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/kingdom, |
| 33 | 33 |
Order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 34 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 35 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1,
|
|
| 35 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 36 | 36 |
Variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/variety, |
| 37 | 37 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 38 | 38 |
taxonfit,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| inputs/QMOR/Specimen/VegBIEN.csv | ||
|---|---|---|
| 59 | 59 |
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 60 | 60 |
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/phylum, |
| 61 | 61 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 62 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 63 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 64 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 62 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 65 | 63 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 66 | 64 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 67 | 65 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| inputs/QMOR/Specimen/test.xml.ref | ||
|---|---|---|
| 157 | 157 |
<order>$order</order> |
| 158 | 158 |
<phylum>$phylum</phylum> |
| 159 | 159 |
<species>$specificEpithet</species> |
| 160 |
<subspecies> |
|
| 161 |
<_join_words> |
|
| 162 |
<1> |
|
| 163 |
<_if name="if has infraspecificEpithet"> |
|
| 164 |
<cond>$infraspecificEpithet</cond> |
|
| 165 |
<then>$taxonRank</then> |
|
| 166 |
</_if> |
|
| 167 |
</1> |
|
| 168 |
<2>$infraspecificEpithet</2> |
|
| 169 |
</_join_words> |
|
| 170 |
</subspecies> |
|
| 160 |
<taxonname>$infraspecificEpithet</taxonname> |
|
| 171 | 161 |
<taxonomicname>$scientificName</taxonomicname> |
| 172 | 162 |
<verbatimrank>$taxonRank</verbatimrank> |
| 173 | 163 |
</taxonconcept> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 183 | 183 |
acceptedOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/order, |
| 184 | 184 |
acceptedPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/phylum, |
| 185 | 185 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/species, |
| 186 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/subspecies/_alt/1, |
|
| 187 |
acceptedInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 188 |
acceptedTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 189 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 186 |
acceptedSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/subspecies, |
|
| 187 |
acceptedInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/taxonname, |
|
| 190 | 188 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/taxonomicname, |
| 191 | 189 |
acceptedVariety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/variety, |
| 192 | 190 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/verbatimrank, |
| ... | ... | |
| 203 | 201 |
order,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/order, |
| 204 | 202 |
phylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/phylum, |
| 205 | 203 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 206 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/1, |
|
| 207 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 208 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 209 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 204 |
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/subspecies, |
|
| 210 | 205 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/author, |
| 211 | 206 |
verbatimClass,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/class, |
| 212 | 207 |
verbatimCultivar,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/cultivar, |
| ... | ... | |
| 218 | 213 |
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/order, |
| 219 | 214 |
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/phylum, |
| 220 | 215 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species, |
| 221 |
verbatimSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/1, |
|
| 222 |
verbatimInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 223 |
verbatimTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 224 |
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies/_alt/2/_join_words/2, |
|
| 225 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 226 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_if[@name=""if has verbatim name""]/then", |
|
| 216 |
verbatimSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies, |
|
| 217 |
verbatimInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/1, |
|
| 218 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/2/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 219 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/2/_if[@name=""if has verbatim name""]/then", |
|
| 227 | 220 |
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicname, |
| 228 | 221 |
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonomicnamewithauthor, |
| 229 | 222 |
verbatimVariety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/variety, |
| 230 | 223 |
verbatimTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/verbatimrank, |
| 231 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 232 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_if[@name=""if has verbatim name""]/else", |
|
| 224 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 225 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/2/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 226 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/2/_if[@name=""if has verbatim name""]/else", |
|
| 233 | 227 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 234 | 228 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 235 | 229 |
variety,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/variety, |
| ... | ... | |
| 263 | 257 |
originalOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/order, |
| 264 | 258 |
originalPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/phylum, |
| 265 | 259 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species, |
| 266 |
originalSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies/_alt/1, |
|
| 267 |
originalInfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 268 |
originalTaxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies/_alt/2/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 269 |
originalInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies/_alt/2/_join_words/2, |
|
| 260 |
originalSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies, |
|
| 261 |
originalInfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonname, |
|
| 270 | 262 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicname, |
| 271 | 263 |
originalScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 272 | 264 |
originalVariety,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/variety, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 184 | 184 |
acceptedPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum, |
| 185 | 185 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species, |
| 186 | 186 |
acceptedSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
| 187 |
acceptedInfraspecificEpithet,"//*_id/taxonconcept/taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 188 |
acceptedTaxonRank,"//*_id/taxonconcept/taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 189 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
|
| 187 |
acceptedInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonname, |
|
| 190 | 188 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonomicname, |
| 191 | 189 |
acceptedVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/variety, |
| 192 | 190 |
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/verbatimrank, |
| ... | ... | |
| 204 | 202 |
phylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/phylum, |
| 205 | 203 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/species, |
| 206 | 204 |
subspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/subspecies, |
| 207 |
infraspecificEpithet,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 208 |
taxonRank,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 209 |
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/subspecies, |
|
| 210 | 205 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/author, |
| 211 | 206 |
verbatimClass,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/class, |
| 212 | 207 |
verbatimCultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/cultivar, |
| ... | ... | |
| 219 | 214 |
verbatimPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum, |
| 220 | 215 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species, |
| 221 | 216 |
verbatimSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
| 222 |
verbatimInfraspecificEpithet,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 223 |
verbatimTaxonRank,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 224 |
verbatimInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
|
| 217 |
verbatimInfraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonname, |
|
| 225 | 218 |
verbatimScientificNameWithAuthorship,"//taxonconcept/taxonname/_if[@name=""if has verbatim name""]/cond/_exists", |
| 226 | 219 |
morphospecies,"//taxonconcept/taxonname/_if[@name=""if has verbatim name""]/then", |
| 227 | 220 |
verbatimScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonomicname, |
| 228 | 221 |
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/taxonomicnamewithauthor, |
| 229 | 222 |
verbatimVariety,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/variety, |
| 230 | 223 |
verbatimTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/verbatimrank, |
| 224 |
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonname, |
|
| 231 | 225 |
verbatimScientificNameWithAuthorship,"//taxonconcept/taxonname/_if[@name=""if has verbatim name""]/cond/_exists", |
| 232 | 226 |
morphospecies,"//taxonconcept/taxonname/_if[@name=""if has verbatim name""]/else", |
| 233 | 227 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonomicname, |
| ... | ... | |
| 264 | 258 |
originalPhylum,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/phylum, |
| 265 | 259 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species, |
| 266 | 260 |
originalSubspecies,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies, |
| 267 |
originalInfraspecificEpithet,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 268 |
originalTaxonRank,"//taxonconcept/subspecies/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 269 |
originalInfraspecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/subspecies, |
|
| 261 |
originalInfraspecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonname, |
|
| 270 | 262 |
originalScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicname, |
| 271 | 263 |
originalScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 272 | 264 |
originalVariety,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/variety, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Remapped *infraspecificEpithet to new taxonconcept.taxonname rather than placing it in subspecies prefixed with the taxonRank, because it isn't necessarily the subspecies and because taxonname is defined to contain the lowest-rank portion of the taxonomic name. Note that when both morphospecies and infraspecificEpithet are provided, infraspecificEpithet takes priority for the taxonname field, because if TNRS leaves unmatched terms (which are tentatively mapped to morphospecies) but also matches an infraspecificEpithet, then the unmatched terms can't be for a morphospecies (because an infraspecificEpithet and therefore also a specificEpithet was matched, so the species is definite and formally named).