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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5242 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Renamed datasource_id to c...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5264 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Also map *taxonRa...
  lib 5239 about 12 years Aaron Marcuse-Kubitza sql_io.py: put_table(): Resolve default value c...
  mappings 5264 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Also map *taxonRa...
  schemas 5262 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonconcept: Renamed morp...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 over 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 13 KB 5227 about 12 years Aaron Marcuse-Kubitza README.TXT: Schema changes: Moved "update the f...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5264 10/05/2012 07:30 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also map *taxonRank to taxonconcept.rank, so that if it's in the taxonrank enum, it will automatically populate this field

5263 10/05/2012 07:14 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Remapped *infraspecificEpithet to new taxonconcept.taxonname rather than placing it in subspecies prefixed with the taxonRank, because it isn't necessarily the subspecies and because taxonname is defined to contain the lowest-rank portion of the taxonomic name. Note that when both morphospecies and infraspecificEpithet are provided, infraspecificEpithet takes priority for the taxonname field, because if TNRS leaves unmatched terms (which are tentatively mapped to morphospecies) but also matches an infraspecificEpithet, then the unmatched terms can't be for a morphospecies (because an infraspecificEpithet and therefore also a specificEpithet was matched, so the species is definite and formally named).

5262 10/05/2012 06:45 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonconcept: Renamed morphospecies to taxonname since it's used in the same way as taxon.taxonname: to store the lowest-rank portion of the taxonomic name, such as the morphospecies suffix

5261 10/05/2012 06:21 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/map.csv: Mapped *_matched terms that are both matched in the input name and which correspond to the matched taxonconcept (Genus_matched, Specific_epithet_matched, etc.) to both the input and matched taxonconcepts

5260 10/05/2012 06:09 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/map.csv: Mapped terms matched in the original string (rather than deduced from the matched taxonconcept) to new verbatim* taxonomic terms

5259 10/05/2012 06:03 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Mapped verbatim* taxonomic terms to the TNRS input taxonconcept

5258 10/05/2012 05:48 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: TNRS input taxonconcept: Split single _if statement controlling where morphospecies goes into two _if statements for each case, so that other verbatim* terms don't need to have an _if statement in their mapping to the input taxonconcept

5257 10/05/2012 05:29 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Added back verbatim* taxonomic terms, which will now be used for the TNRS input taxonconcept. Note that they will have a different meaning than the original* taxonomic terms that they were renamed to in r5062.

5256 10/05/2012 05:22 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: In TNRS mode, remapped morphospecies (Unmatched_terms) to the input name's taxonconcept, because this does not relate to the matched taxon concept

5255 10/05/2012 05:12 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: TNRS-only mappings: Switch them on when verbatimScientificNameWithAuthorship is provided rather than when acceptedScientificNameWithAuthorship is provided, because it's the presence of a separate TNRS input name that really determines when TNRS is being mapped

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