Revision 5295
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/Madidi/Organism/VegBIEN.csv | ||
---|---|---|
55 | 55 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera |
56 | 56 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family, |
57 | 57 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,Often = Genera |
58 |
Field name,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",Often = Genera |
|
59 |
Field family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
58 | 60 |
Index collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
59 | 61 |
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
60 | 62 |
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate" |
inputs/Madidi/Organism/test.xml.ref | ||
---|---|---|
184 | 184 |
</canon_taxonconcept_id> |
185 | 185 |
<family>$Field family</family> |
186 | 186 |
<genus>$Field name</genus> |
187 |
<parent_id> |
|
188 |
<taxonconcept> |
|
189 |
<rank>cultivar</rank> |
|
190 |
<parent_id> |
|
191 |
<taxonconcept> |
|
192 |
<rank>forma</rank> |
|
193 |
<parent_id> |
|
194 |
<taxonconcept> |
|
195 |
<rank>variety</rank> |
|
196 |
<parent_id> |
|
197 |
<taxonconcept> |
|
198 |
<rank>subspecies</rank> |
|
199 |
<parent_id> |
|
200 |
<taxonconcept> |
|
201 |
<rank>species</rank> |
|
202 |
<parent_id> |
|
203 |
<taxonconcept> |
|
204 |
<rank>genus</rank> |
|
205 |
<taxonname>$Field name</taxonname> |
|
206 |
<parent_id> |
|
207 |
<taxonconcept> |
|
208 |
<rank>family</rank> |
|
209 |
<taxonname>$Field family</taxonname> |
|
210 |
</taxonconcept> |
|
211 |
</parent_id> |
|
212 |
</taxonconcept> |
|
213 |
</parent_id> |
|
214 |
</taxonconcept> |
|
215 |
</parent_id> |
|
216 |
</taxonconcept> |
|
217 |
</parent_id> |
|
218 |
</taxonconcept> |
|
219 |
</parent_id> |
|
220 |
</taxonconcept> |
|
221 |
</parent_id> |
|
222 |
</taxonconcept> |
|
223 |
</parent_id> |
|
187 | 224 |
</taxonconcept> |
188 | 225 |
</taxonconcept_id> |
189 | 226 |
</taxondetermination> |
inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
---|---|---|
85 | 85 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
86 | 86 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
87 | 87 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,Brad: OMIT |
88 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",Brad: OMIT |
|
89 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Brad: OMIT |
|
88 | 90 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,Brad: OMIT |
89 | 91 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
90 | 92 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
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250 | 250 |
</taxonconcept> |
251 | 251 |
</canon_taxonconcept_id> |
252 | 252 |
<family>$orig_family</family> |
253 |
<parent_id> |
|
254 |
<taxonconcept> |
|
255 |
<rank>cultivar</rank> |
|
256 |
<parent_id> |
|
257 |
<taxonconcept> |
|
258 |
<rank>forma</rank> |
|
259 |
<parent_id> |
|
260 |
<taxonconcept> |
|
261 |
<rank>variety</rank> |
|
262 |
<parent_id> |
|
263 |
<taxonconcept> |
|
264 |
<rank>subspecies</rank> |
|
265 |
<parent_id> |
|
266 |
<taxonconcept> |
|
267 |
<rank>species</rank> |
|
268 |
<taxonname>$orig_species</taxonname> |
|
269 |
<parent_id> |
|
270 |
<taxonconcept> |
|
271 |
<rank>genus</rank> |
|
272 |
<parent_id> |
|
273 |
<taxonconcept> |
|
274 |
<rank>family</rank> |
|
275 |
<taxonname>$orig_family</taxonname> |
|
276 |
</taxonconcept> |
|
277 |
</parent_id> |
|
278 |
</taxonconcept> |
|
279 |
</parent_id> |
|
280 |
</taxonconcept> |
|
281 |
</parent_id> |
|
282 |
</taxonconcept> |
|
283 |
</parent_id> |
|
284 |
</taxonconcept> |
|
285 |
</parent_id> |
|
286 |
</taxonconcept> |
|
287 |
</parent_id> |
|
288 |
</taxonconcept> |
|
289 |
</parent_id> |
|
253 | 290 |
<species>$orig_species</species> |
254 | 291 |
</taxonconcept> |
255 | 292 |
</taxonconcept_id> |
... | ... | |
288 | 325 |
</path> |
289 | 326 |
</_simplifyPath> |
290 | 327 |
</VegBIEN> |
291 |
Inserted 48 new rows into database |
|
328 |
Inserted 50 new rows into database |
inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
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80 | 80 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
81 | 81 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,Brad: OMIT |
82 | 82 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus, |
83 |
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",Brad: OMIT |
|
84 |
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
85 |
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Brad: OMIT |
|
83 | 86 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,Brad: OMIT |
84 | 87 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
85 | 88 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
inputs/SALVIAS/plotObservations/test.xml.ref | ||
---|---|---|
223 | 223 |
</canon_taxonconcept_id> |
224 | 224 |
<family>$OrigFamily</family> |
225 | 225 |
<genus>$OrigGenus</genus> |
226 |
<parent_id> |
|
227 |
<taxonconcept> |
|
228 |
<rank>cultivar</rank> |
|
229 |
<parent_id> |
|
230 |
<taxonconcept> |
|
231 |
<rank>forma</rank> |
|
232 |
<parent_id> |
|
233 |
<taxonconcept> |
|
234 |
<rank>variety</rank> |
|
235 |
<parent_id> |
|
236 |
<taxonconcept> |
|
237 |
<rank>subspecies</rank> |
|
238 |
<parent_id> |
|
239 |
<taxonconcept> |
|
240 |
<rank>species</rank> |
|
241 |
<taxonname>$OrigSpecies</taxonname> |
|
242 |
<parent_id> |
|
243 |
<taxonconcept> |
|
244 |
<rank>genus</rank> |
|
245 |
<taxonname>$OrigGenus</taxonname> |
|
246 |
<parent_id> |
|
247 |
<taxonconcept> |
|
248 |
<rank>family</rank> |
|
249 |
<taxonname>$OrigFamily</taxonname> |
|
250 |
</taxonconcept> |
|
251 |
</parent_id> |
|
252 |
</taxonconcept> |
|
253 |
</parent_id> |
|
254 |
</taxonconcept> |
|
255 |
</parent_id> |
|
256 |
</taxonconcept> |
|
257 |
</parent_id> |
|
258 |
</taxonconcept> |
|
259 |
</parent_id> |
|
260 |
</taxonconcept> |
|
261 |
</parent_id> |
|
262 |
</taxonconcept> |
|
263 |
</parent_id> |
|
226 | 264 |
<species>$OrigSpecies</species> |
227 | 265 |
</taxonconcept> |
228 | 266 |
</taxonconcept_id> |
inputs/.TNRS/tnrs/VegBIEN.csv | ||
---|---|---|
16 | 16 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
17 | 17 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
18 | 18 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2, |
19 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
19 | 20 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/rank, |
20 | 21 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/taxonomicname, |
21 | 22 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/verbatimrank, |
... | ... | |
31 | 32 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/family,Contains family in original string (uncommon) |
32 | 33 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/genus, |
33 | 34 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname, |
35 |
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
36 |
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
37 |
Family_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Contains family in original string (uncommon) |
|
34 | 38 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species, |
35 | 39 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/1, |
36 | 40 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/2/_if[@name=""if has verbatim name""]/cond/_exists", |
inputs/.TNRS/tnrs/test.xml.ref | ||
---|---|---|
53 | 53 |
<2>$Accepted_name_author</2> |
54 | 54 |
</_join_words> |
55 | 55 |
</identifyingtaxonomicname> |
56 |
<parent_id> |
|
57 |
<taxonconcept> |
|
58 |
<rank>cultivar</rank> |
|
59 |
<parent_id> |
|
60 |
<taxonconcept> |
|
61 |
<rank>forma</rank> |
|
62 |
<parent_id> |
|
63 |
<taxonconcept> |
|
64 |
<rank>variety</rank> |
|
65 |
<parent_id> |
|
66 |
<taxonconcept> |
|
67 |
<rank>subspecies</rank> |
|
68 |
<parent_id> |
|
69 |
<taxonconcept> |
|
70 |
<rank>species</rank> |
|
71 |
<parent_id> |
|
72 |
<taxonconcept> |
|
73 |
<rank>genus</rank> |
|
74 |
<parent_id> |
|
75 |
<taxonconcept> |
|
76 |
<rank>family</rank> |
|
77 |
<taxonname>$Accepted_name_family</taxonname> |
|
78 |
</taxonconcept> |
|
79 |
</parent_id> |
|
80 |
</taxonconcept> |
|
81 |
</parent_id> |
|
82 |
</taxonconcept> |
|
83 |
</parent_id> |
|
84 |
</taxonconcept> |
|
85 |
</parent_id> |
|
86 |
</taxonconcept> |
|
87 |
</parent_id> |
|
88 |
</taxonconcept> |
|
89 |
</parent_id> |
|
90 |
</taxonconcept> |
|
91 |
</parent_id> |
|
56 | 92 |
<rank>$Accepted_name_rank</rank> |
57 | 93 |
<taxonomicname>$Accepted_name</taxonomicname> |
58 | 94 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
... | ... | |
107 | 143 |
<family>$Family_matched</family> |
108 | 144 |
<genus>$Genus_matched</genus> |
109 | 145 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
146 |
<parent_id> |
|
147 |
<taxonconcept> |
|
148 |
<rank>cultivar</rank> |
|
149 |
<parent_id> |
|
150 |
<taxonconcept> |
|
151 |
<rank>forma</rank> |
|
152 |
<parent_id> |
|
153 |
<taxonconcept> |
|
154 |
<rank>variety</rank> |
|
155 |
<parent_id> |
|
156 |
<taxonconcept> |
|
157 |
<rank>subspecies</rank> |
|
158 |
<parent_id> |
|
159 |
<taxonconcept> |
|
160 |
<rank>species</rank> |
|
161 |
<taxonname>$Specific_epithet_matched</taxonname> |
|
162 |
<parent_id> |
|
163 |
<taxonconcept> |
|
164 |
<rank>genus</rank> |
|
165 |
<taxonname>$Genus_matched</taxonname> |
|
166 |
<parent_id> |
|
167 |
<taxonconcept> |
|
168 |
<rank>family</rank> |
|
169 |
<taxonname>$Family_matched</taxonname> |
|
170 |
</taxonconcept> |
|
171 |
</parent_id> |
|
172 |
</taxonconcept> |
|
173 |
</parent_id> |
|
174 |
</taxonconcept> |
|
175 |
</parent_id> |
|
176 |
</taxonconcept> |
|
177 |
</parent_id> |
|
178 |
</taxonconcept> |
|
179 |
</parent_id> |
|
180 |
</taxonconcept> |
|
181 |
</parent_id> |
|
182 |
</taxonconcept> |
|
183 |
</parent_id> |
|
110 | 184 |
<species>$Specific_epithet_matched</species> |
111 | 185 |
<taxonname> |
112 | 186 |
<_alt> |
... | ... | |
130 | 204 |
</path> |
131 | 205 |
</_simplifyPath> |
132 | 206 |
</VegBIEN> |
133 |
Inserted 10 new rows into database |
|
207 |
Inserted 12 new rows into database |
inputs/GBIF/Specimen/VegBIEN.csv | ||
---|---|---|
40 | 40 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
41 | 41 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family, |
42 | 42 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus, |
43 |
GBIFGenusOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
44 |
GBIFFamilyOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
43 | 45 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicname, |
44 | 46 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
45 | 47 |
CatalogNO,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
inputs/GBIF/Specimen/test.xml.ref | ||
---|---|---|
169 | 169 |
</canon_taxonconcept_id> |
170 | 170 |
<family>$GBIFFamilyOriginal</family> |
171 | 171 |
<genus>$GBIFGenusOriginal</genus> |
172 |
<parent_id> |
|
173 |
<taxonconcept> |
|
174 |
<rank>cultivar</rank> |
|
175 |
<parent_id> |
|
176 |
<taxonconcept> |
|
177 |
<rank>forma</rank> |
|
178 |
<parent_id> |
|
179 |
<taxonconcept> |
|
180 |
<rank>variety</rank> |
|
181 |
<parent_id> |
|
182 |
<taxonconcept> |
|
183 |
<rank>subspecies</rank> |
|
184 |
<parent_id> |
|
185 |
<taxonconcept> |
|
186 |
<rank>species</rank> |
|
187 |
<parent_id> |
|
188 |
<taxonconcept> |
|
189 |
<rank>genus</rank> |
|
190 |
<taxonname>$GBIFGenusOriginal</taxonname> |
|
191 |
<parent_id> |
|
192 |
<taxonconcept> |
|
193 |
<rank>family</rank> |
|
194 |
<taxonname>$GBIFFamilyOriginal</taxonname> |
|
195 |
</taxonconcept> |
|
196 |
</parent_id> |
|
197 |
</taxonconcept> |
|
198 |
</parent_id> |
|
199 |
</taxonconcept> |
|
200 |
</parent_id> |
|
201 |
</taxonconcept> |
|
202 |
</parent_id> |
|
203 |
</taxonconcept> |
|
204 |
</parent_id> |
|
205 |
</taxonconcept> |
|
206 |
</parent_id> |
|
207 |
</taxonconcept> |
|
208 |
</parent_id> |
|
172 | 209 |
<taxonomicname>$ScientificNameOriginal</taxonomicname> |
173 | 210 |
</taxonconcept> |
174 | 211 |
</taxonconcept_id> |
mappings/VegCore-VegBIEN.csv | ||
---|---|---|
166 | 166 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2, |
167 | 167 |
acceptedKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/kingdom, |
168 | 168 |
acceptedOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/order, |
169 |
acceptedCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=cultivar]/taxonname", |
|
170 |
acceptedForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=forma]/taxonname", |
|
171 |
acceptedVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=variety]/taxonname", |
|
172 |
acceptedSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
173 |
acceptedSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
174 |
acceptedGenus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
175 |
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
176 |
acceptedOrder,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
177 |
acceptedClass,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
178 |
acceptedPhylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
179 |
acceptedKingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
169 | 180 |
acceptedPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/phylum, |
170 | 181 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/rank, |
171 | 182 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/species, |
... | ... | |
209 | 220 |
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname, |
210 | 221 |
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/kingdom, |
211 | 222 |
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/order, |
223 |
verbatimCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=cultivar]/taxonname", |
|
224 |
verbatimForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=forma]/taxonname", |
|
225 |
verbatimVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=variety]/taxonname", |
|
226 |
verbatimSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
227 |
verbatimSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
228 |
verbatimGenus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
229 |
verbatimFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
230 |
verbatimOrder,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
231 |
verbatimClass,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
232 |
verbatimPhylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
233 |
verbatimKingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
212 | 234 |
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/phylum, |
213 | 235 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species, |
214 | 236 |
verbatimSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies, |
... | ... | |
253 | 275 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus, |
254 | 276 |
originalKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/kingdom, |
255 | 277 |
originalOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/order, |
278 |
originalCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=cultivar]/taxonname", |
|
279 |
originalForma,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=forma]/taxonname", |
|
280 |
originalVariety,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=variety]/taxonname", |
|
281 |
originalSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
282 |
originalSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
283 |
originalGenus,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
284 |
originalFamily,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
285 |
originalOrder,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
286 |
originalClass,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
287 |
originalPhylum,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
288 |
originalKingdom,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
256 | 289 |
originalPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/phylum, |
257 | 290 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/rank, |
258 | 291 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species, |
mappings/for_review/VegCore-VegBIEN.csv | ||
---|---|---|
166 | 166 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname, |
167 | 167 |
acceptedKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/kingdom, |
168 | 168 |
acceptedOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/order, |
169 |
acceptedCultivar,//*_id/taxonconcept/taxonconcept/parent_id[rank=cultivar]/taxonname, |
|
170 |
acceptedForma,//*_id/taxonconcept/taxonconcept/parent_id[rank=forma]/taxonname, |
|
171 |
acceptedVariety,//*_id/taxonconcept/taxonconcept/parent_id[rank=variety]/taxonname, |
|
172 |
acceptedSubspecies,//*_id/taxonconcept/taxonconcept/parent_id[rank=subspecies]/taxonname, |
|
173 |
acceptedSpecificEpithet,//*_id/taxonconcept/taxonconcept/parent_id[rank=species]/taxonname, |
|
174 |
acceptedGenus,//*_id/taxonconcept/taxonconcept/parent_id[rank=genus]/taxonname, |
|
175 |
acceptedFamily,//*_id/taxonconcept/taxonconcept/parent_id[rank=family]/taxonname, |
|
176 |
acceptedOrder,//*_id/taxonconcept/taxonconcept/parent_id[rank=order]/taxonname, |
|
177 |
acceptedClass,//*_id/taxonconcept/taxonconcept/parent_id[rank=class]/taxonname, |
|
178 |
acceptedPhylum,//*_id/taxonconcept/taxonconcept/parent_id[rank=phylum]/taxonname, |
|
179 |
acceptedKingdom,//*_id/taxonconcept/taxonconcept/parent_id[rank=kingdom]/taxonname, |
|
169 | 180 |
acceptedPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum, |
170 | 181 |
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/rank, |
171 | 182 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species, |
... | ... | |
209 | 220 |
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname, |
210 | 221 |
verbatimKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/kingdom, |
211 | 222 |
verbatimOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/order, |
223 |
verbatimCultivar,//taxonconcept/parent_id[rank=cultivar]/taxonname, |
|
224 |
verbatimForma,//taxonconcept/parent_id[rank=forma]/taxonname, |
|
225 |
verbatimVariety,//taxonconcept/parent_id[rank=variety]/taxonname, |
|
226 |
verbatimSubspecies,//taxonconcept/parent_id[rank=subspecies]/taxonname, |
|
227 |
verbatimSpecificEpithet,//taxonconcept/parent_id[rank=species]/taxonname, |
|
228 |
verbatimGenus,//taxonconcept/parent_id[rank=genus]/taxonname, |
|
229 |
verbatimFamily,//taxonconcept/parent_id[rank=family]/taxonname, |
|
230 |
verbatimOrder,//taxonconcept/parent_id[rank=order]/taxonname, |
|
231 |
verbatimClass,//taxonconcept/parent_id[rank=class]/taxonname, |
|
232 |
verbatimPhylum,//taxonconcept/parent_id[rank=phylum]/taxonname, |
|
233 |
verbatimKingdom,//taxonconcept/parent_id[rank=kingdom]/taxonname, |
|
212 | 234 |
verbatimPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum, |
213 | 235 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species, |
214 | 236 |
verbatimSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies, |
... | ... | |
253 | 275 |
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus, |
254 | 276 |
originalKingdom,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/kingdom, |
255 | 277 |
originalOrder,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/order, |
278 |
originalCultivar,//taxonconcept/parent_id[rank=cultivar]/taxonname, |
|
279 |
originalForma,//taxonconcept/parent_id[rank=forma]/taxonname, |
|
280 |
originalVariety,//taxonconcept/parent_id[rank=variety]/taxonname, |
|
281 |
originalSubspecies,//taxonconcept/parent_id[rank=subspecies]/taxonname, |
|
282 |
originalSpecificEpithet,//taxonconcept/parent_id[rank=species]/taxonname, |
|
283 |
originalGenus,//taxonconcept/parent_id[rank=genus]/taxonname, |
|
284 |
originalFamily,//taxonconcept/parent_id[rank=family]/taxonname, |
|
285 |
originalOrder,//taxonconcept/parent_id[rank=order]/taxonname, |
|
286 |
originalClass,//taxonconcept/parent_id[rank=class]/taxonname, |
|
287 |
originalPhylum,//taxonconcept/parent_id[rank=phylum]/taxonname, |
|
288 |
originalKingdom,//taxonconcept/parent_id[rank=kingdom]/taxonname, |
|
256 | 289 |
originalPhylum,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/phylum, |
257 | 290 |
originalTaxonRank,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/rank, |
258 | 291 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: taxonconcepts: Also create the taxonconcept tree for taxonconcepts created from original*, verbatim*, and accepted* taxonomic terms