Project

General

Profile

« Previous | Next » 

Revision 5295

mappings/VegCore-VegBIEN.csv: taxonconcepts: Also create the taxonconcept tree for taxonconcepts created from original*, verbatim*, and accepted* taxonomic terms

View differences:

inputs/Madidi/Organism/VegBIEN.csv
55 55
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera
56 56
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,
57 57
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,Often = Genera
58
Field name,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",Often = Genera
59
Field family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
58 60
Index collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
59 61
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
60 62
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate"
inputs/Madidi/Organism/test.xml.ref
184 184
                                    </canon_taxonconcept_id>
185 185
                                    <family>$Field family</family>
186 186
                                    <genus>$Field name</genus>
187
                                    <parent_id>
188
                                        <taxonconcept>
189
                                            <rank>cultivar</rank>
190
                                            <parent_id>
191
                                                <taxonconcept>
192
                                                    <rank>forma</rank>
193
                                                    <parent_id>
194
                                                        <taxonconcept>
195
                                                            <rank>variety</rank>
196
                                                            <parent_id>
197
                                                                <taxonconcept>
198
                                                                    <rank>subspecies</rank>
199
                                                                    <parent_id>
200
                                                                        <taxonconcept>
201
                                                                            <rank>species</rank>
202
                                                                            <parent_id>
203
                                                                                <taxonconcept>
204
                                                                                    <rank>genus</rank>
205
                                                                                    <taxonname>$Field name</taxonname>
206
                                                                                    <parent_id>
207
                                                                                        <taxonconcept>
208
                                                                                            <rank>family</rank>
209
                                                                                            <taxonname>$Field family</taxonname>
210
                                                                                        </taxonconcept>
211
                                                                                    </parent_id>
212
                                                                                </taxonconcept>
213
                                                                            </parent_id>
214
                                                                        </taxonconcept>
215
                                                                    </parent_id>
216
                                                                </taxonconcept>
217
                                                            </parent_id>
218
                                                        </taxonconcept>
219
                                                    </parent_id>
220
                                                </taxonconcept>
221
                                            </parent_id>
222
                                        </taxonconcept>
223
                                    </parent_id>
187 224
                                </taxonconcept>
188 225
                            </taxonconcept_id>
189 226
                        </taxondetermination>
inputs/SALVIAS-CSV/Organism/VegBIEN.csv
85 85
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT
86 86
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT
87 87
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,Brad: OMIT
88
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",Brad: OMIT
89
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Brad: OMIT
88 90
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,Brad: OMIT
89 91
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above
90 92
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
inputs/SALVIAS-CSV/Organism/test.xml.ref
250 250
                                        </taxonconcept>
251 251
                                    </canon_taxonconcept_id>
252 252
                                    <family>$orig_family</family>
253
                                    <parent_id>
254
                                        <taxonconcept>
255
                                            <rank>cultivar</rank>
256
                                            <parent_id>
257
                                                <taxonconcept>
258
                                                    <rank>forma</rank>
259
                                                    <parent_id>
260
                                                        <taxonconcept>
261
                                                            <rank>variety</rank>
262
                                                            <parent_id>
263
                                                                <taxonconcept>
264
                                                                    <rank>subspecies</rank>
265
                                                                    <parent_id>
266
                                                                        <taxonconcept>
267
                                                                            <rank>species</rank>
268
                                                                            <taxonname>$orig_species</taxonname>
269
                                                                            <parent_id>
270
                                                                                <taxonconcept>
271
                                                                                    <rank>genus</rank>
272
                                                                                    <parent_id>
273
                                                                                        <taxonconcept>
274
                                                                                            <rank>family</rank>
275
                                                                                            <taxonname>$orig_family</taxonname>
276
                                                                                        </taxonconcept>
277
                                                                                    </parent_id>
278
                                                                                </taxonconcept>
279
                                                                            </parent_id>
280
                                                                        </taxonconcept>
281
                                                                    </parent_id>
282
                                                                </taxonconcept>
283
                                                            </parent_id>
284
                                                        </taxonconcept>
285
                                                    </parent_id>
286
                                                </taxonconcept>
287
                                            </parent_id>
288
                                        </taxonconcept>
289
                                    </parent_id>
253 290
                                    <species>$orig_species</species>
254 291
                                </taxonconcept>
255 292
                            </taxonconcept_id>
......
288 325
        </path>
289 326
    </_simplifyPath>
290 327
</VegBIEN>
291
Inserted 48 new rows into database
328
Inserted 50 new rows into database
inputs/SALVIAS/plotObservations/VegBIEN.csv
80 80
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT
81 81
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,Brad: OMIT
82 82
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,
83
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",Brad: OMIT
84
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
85
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Brad: OMIT
83 86
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,Brad: OMIT
84 87
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above
85 88
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
inputs/SALVIAS/plotObservations/test.xml.ref
223 223
                                    </canon_taxonconcept_id>
224 224
                                    <family>$OrigFamily</family>
225 225
                                    <genus>$OrigGenus</genus>
226
                                    <parent_id>
227
                                        <taxonconcept>
228
                                            <rank>cultivar</rank>
229
                                            <parent_id>
230
                                                <taxonconcept>
231
                                                    <rank>forma</rank>
232
                                                    <parent_id>
233
                                                        <taxonconcept>
234
                                                            <rank>variety</rank>
235
                                                            <parent_id>
236
                                                                <taxonconcept>
237
                                                                    <rank>subspecies</rank>
238
                                                                    <parent_id>
239
                                                                        <taxonconcept>
240
                                                                            <rank>species</rank>
241
                                                                            <taxonname>$OrigSpecies</taxonname>
242
                                                                            <parent_id>
243
                                                                                <taxonconcept>
244
                                                                                    <rank>genus</rank>
245
                                                                                    <taxonname>$OrigGenus</taxonname>
246
                                                                                    <parent_id>
247
                                                                                        <taxonconcept>
248
                                                                                            <rank>family</rank>
249
                                                                                            <taxonname>$OrigFamily</taxonname>
250
                                                                                        </taxonconcept>
251
                                                                                    </parent_id>
252
                                                                                </taxonconcept>
253
                                                                            </parent_id>
254
                                                                        </taxonconcept>
255
                                                                    </parent_id>
256
                                                                </taxonconcept>
257
                                                            </parent_id>
258
                                                        </taxonconcept>
259
                                                    </parent_id>
260
                                                </taxonconcept>
261
                                            </parent_id>
262
                                        </taxonconcept>
263
                                    </parent_id>
226 264
                                    <species>$OrigSpecies</species>
227 265
                                </taxonconcept>
228 266
                            </taxonconcept_id>
inputs/.TNRS/tnrs/VegBIEN.csv
16 16
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
17 17
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
18 18
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2,
19
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
19 20
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/rank,
20 21
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/taxonomicname,
21 22
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/verbatimrank,
......
31 32
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/family,Contains family in original string (uncommon)
32 33
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/genus,
33 34
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname,
35
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
36
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
37
Family_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Contains family in original string (uncommon)
34 38
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species,
35 39
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/1,
36 40
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/taxonname/_alt/2/_if[@name=""if has verbatim name""]/cond/_exists",
inputs/.TNRS/tnrs/test.xml.ref
53 53
                                                        <2>$Accepted_name_author</2>
54 54
                                                    </_join_words>
55 55
                                                </identifyingtaxonomicname>
56
                                                <parent_id>
57
                                                    <taxonconcept>
58
                                                        <rank>cultivar</rank>
59
                                                        <parent_id>
60
                                                            <taxonconcept>
61
                                                                <rank>forma</rank>
62
                                                                <parent_id>
63
                                                                    <taxonconcept>
64
                                                                        <rank>variety</rank>
65
                                                                        <parent_id>
66
                                                                            <taxonconcept>
67
                                                                                <rank>subspecies</rank>
68
                                                                                <parent_id>
69
                                                                                    <taxonconcept>
70
                                                                                        <rank>species</rank>
71
                                                                                        <parent_id>
72
                                                                                            <taxonconcept>
73
                                                                                                <rank>genus</rank>
74
                                                                                                <parent_id>
75
                                                                                                    <taxonconcept>
76
                                                                                                        <rank>family</rank>
77
                                                                                                        <taxonname>$Accepted_name_family</taxonname>
78
                                                                                                    </taxonconcept>
79
                                                                                                </parent_id>
80
                                                                                            </taxonconcept>
81
                                                                                        </parent_id>
82
                                                                                    </taxonconcept>
83
                                                                                </parent_id>
84
                                                                            </taxonconcept>
85
                                                                        </parent_id>
86
                                                                    </taxonconcept>
87
                                                                </parent_id>
88
                                                            </taxonconcept>
89
                                                        </parent_id>
90
                                                    </taxonconcept>
91
                                                </parent_id>
56 92
                                                <rank>$Accepted_name_rank</rank>
57 93
                                                <taxonomicname>$Accepted_name</taxonomicname>
58 94
                                                <verbatimrank>$Accepted_name_rank</verbatimrank>
......
107 143
                                        <family>$Family_matched</family>
108 144
                                        <genus>$Genus_matched</genus>
109 145
                                        <identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname>
146
                                        <parent_id>
147
                                            <taxonconcept>
148
                                                <rank>cultivar</rank>
149
                                                <parent_id>
150
                                                    <taxonconcept>
151
                                                        <rank>forma</rank>
152
                                                        <parent_id>
153
                                                            <taxonconcept>
154
                                                                <rank>variety</rank>
155
                                                                <parent_id>
156
                                                                    <taxonconcept>
157
                                                                        <rank>subspecies</rank>
158
                                                                        <parent_id>
159
                                                                            <taxonconcept>
160
                                                                                <rank>species</rank>
161
                                                                                <taxonname>$Specific_epithet_matched</taxonname>
162
                                                                                <parent_id>
163
                                                                                    <taxonconcept>
164
                                                                                        <rank>genus</rank>
165
                                                                                        <taxonname>$Genus_matched</taxonname>
166
                                                                                        <parent_id>
167
                                                                                            <taxonconcept>
168
                                                                                                <rank>family</rank>
169
                                                                                                <taxonname>$Family_matched</taxonname>
170
                                                                                            </taxonconcept>
171
                                                                                        </parent_id>
172
                                                                                    </taxonconcept>
173
                                                                                </parent_id>
174
                                                                            </taxonconcept>
175
                                                                        </parent_id>
176
                                                                    </taxonconcept>
177
                                                                </parent_id>
178
                                                            </taxonconcept>
179
                                                        </parent_id>
180
                                                    </taxonconcept>
181
                                                </parent_id>
182
                                            </taxonconcept>
183
                                        </parent_id>
110 184
                                        <species>$Specific_epithet_matched</species>
111 185
                                        <taxonname>
112 186
                                            <_alt>
......
130 204
        </path>
131 205
    </_simplifyPath>
132 206
</VegBIEN>
133
Inserted 10 new rows into database
207
Inserted 12 new rows into database
inputs/GBIF/Specimen/VegBIEN.csv
40 40
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
41 41
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,
42 42
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,
43
GBIFGenusOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
44
GBIFFamilyOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
43 45
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicname,
44 46
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname,
45 47
CatalogNO,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
inputs/GBIF/Specimen/test.xml.ref
169 169
                                    </canon_taxonconcept_id>
170 170
                                    <family>$GBIFFamilyOriginal</family>
171 171
                                    <genus>$GBIFGenusOriginal</genus>
172
                                    <parent_id>
173
                                        <taxonconcept>
174
                                            <rank>cultivar</rank>
175
                                            <parent_id>
176
                                                <taxonconcept>
177
                                                    <rank>forma</rank>
178
                                                    <parent_id>
179
                                                        <taxonconcept>
180
                                                            <rank>variety</rank>
181
                                                            <parent_id>
182
                                                                <taxonconcept>
183
                                                                    <rank>subspecies</rank>
184
                                                                    <parent_id>
185
                                                                        <taxonconcept>
186
                                                                            <rank>species</rank>
187
                                                                            <parent_id>
188
                                                                                <taxonconcept>
189
                                                                                    <rank>genus</rank>
190
                                                                                    <taxonname>$GBIFGenusOriginal</taxonname>
191
                                                                                    <parent_id>
192
                                                                                        <taxonconcept>
193
                                                                                            <rank>family</rank>
194
                                                                                            <taxonname>$GBIFFamilyOriginal</taxonname>
195
                                                                                        </taxonconcept>
196
                                                                                    </parent_id>
197
                                                                                </taxonconcept>
198
                                                                            </parent_id>
199
                                                                        </taxonconcept>
200
                                                                    </parent_id>
201
                                                                </taxonconcept>
202
                                                            </parent_id>
203
                                                        </taxonconcept>
204
                                                    </parent_id>
205
                                                </taxonconcept>
206
                                            </parent_id>
207
                                        </taxonconcept>
208
                                    </parent_id>
172 209
                                    <taxonomicname>$ScientificNameOriginal</taxonomicname>
173 210
                                </taxonconcept>
174 211
                            </taxonconcept_id>
mappings/VegCore-VegBIEN.csv
166 166
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2,
167 167
acceptedKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/kingdom,
168 168
acceptedOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/order,
169
acceptedCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=cultivar]/taxonname",
170
acceptedForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=forma]/taxonname",
171
acceptedVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=variety]/taxonname",
172
acceptedSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
173
acceptedSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
174
acceptedGenus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
175
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
176
acceptedOrder,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname",
177
acceptedClass,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname",
178
acceptedPhylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname",
179
acceptedKingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname",
169 180
acceptedPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/phylum,
170 181
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/rank,
171 182
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_taxonconcept_id/taxonconcept/species,
......
209 220
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/identifyingtaxonomicname,
210 221
verbatimKingdom,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/kingdom,
211 222
verbatimOrder,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/order,
223
verbatimCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=cultivar]/taxonname",
224
verbatimForma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=forma]/taxonname",
225
verbatimVariety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=variety]/taxonname",
226
verbatimSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
227
verbatimSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
228
verbatimGenus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
229
verbatimFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
230
verbatimOrder,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname",
231
verbatimClass,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname",
232
verbatimPhylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname",
233
verbatimKingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname",
212 234
verbatimPhylum,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/phylum,
213 235
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/species,
214 236
verbatimSubspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_taxonconcept_id]/subspecies,
......
253 275
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,
254 276
originalKingdom,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/kingdom,
255 277
originalOrder,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/order,
278
originalCultivar,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=cultivar]/taxonname",
279
originalForma,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=forma]/taxonname",
280
originalVariety,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=variety]/taxonname",
281
originalSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
282
originalSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
283
originalGenus,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
284
originalFamily,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
285
originalOrder,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname",
286
originalClass,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname",
287
originalPhylum,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname",
288
originalKingdom,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname",
256 289
originalPhylum,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/phylum,
257 290
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/rank,
258 291
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,
mappings/for_review/VegCore-VegBIEN.csv
166 166
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname,
167 167
acceptedKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/kingdom,
168 168
acceptedOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/order,
169
acceptedCultivar,//*_id/taxonconcept/taxonconcept/parent_id[rank=cultivar]/taxonname,
170
acceptedForma,//*_id/taxonconcept/taxonconcept/parent_id[rank=forma]/taxonname,
171
acceptedVariety,//*_id/taxonconcept/taxonconcept/parent_id[rank=variety]/taxonname,
172
acceptedSubspecies,//*_id/taxonconcept/taxonconcept/parent_id[rank=subspecies]/taxonname,
173
acceptedSpecificEpithet,//*_id/taxonconcept/taxonconcept/parent_id[rank=species]/taxonname,
174
acceptedGenus,//*_id/taxonconcept/taxonconcept/parent_id[rank=genus]/taxonname,
175
acceptedFamily,//*_id/taxonconcept/taxonconcept/parent_id[rank=family]/taxonname,
176
acceptedOrder,//*_id/taxonconcept/taxonconcept/parent_id[rank=order]/taxonname,
177
acceptedClass,//*_id/taxonconcept/taxonconcept/parent_id[rank=class]/taxonname,
178
acceptedPhylum,//*_id/taxonconcept/taxonconcept/parent_id[rank=phylum]/taxonname,
179
acceptedKingdom,//*_id/taxonconcept/taxonconcept/parent_id[rank=kingdom]/taxonname,
169 180
acceptedPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum,
170 181
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/rank,
171 182
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species,
......
209 220
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname,
210 221
verbatimKingdom,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/kingdom,
211 222
verbatimOrder,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/order,
223
verbatimCultivar,//taxonconcept/parent_id[rank=cultivar]/taxonname,
224
verbatimForma,//taxonconcept/parent_id[rank=forma]/taxonname,
225
verbatimVariety,//taxonconcept/parent_id[rank=variety]/taxonname,
226
verbatimSubspecies,//taxonconcept/parent_id[rank=subspecies]/taxonname,
227
verbatimSpecificEpithet,//taxonconcept/parent_id[rank=species]/taxonname,
228
verbatimGenus,//taxonconcept/parent_id[rank=genus]/taxonname,
229
verbatimFamily,//taxonconcept/parent_id[rank=family]/taxonname,
230
verbatimOrder,//taxonconcept/parent_id[rank=order]/taxonname,
231
verbatimClass,//taxonconcept/parent_id[rank=class]/taxonname,
232
verbatimPhylum,//taxonconcept/parent_id[rank=phylum]/taxonname,
233
verbatimKingdom,//taxonconcept/parent_id[rank=kingdom]/taxonname,
212 234
verbatimPhylum,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/phylum,
213 235
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/species,
214 236
verbatimSubspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/subspecies,
......
253 275
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,
254 276
originalKingdom,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/kingdom,
255 277
originalOrder,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/order,
278
originalCultivar,//taxonconcept/parent_id[rank=cultivar]/taxonname,
279
originalForma,//taxonconcept/parent_id[rank=forma]/taxonname,
280
originalVariety,//taxonconcept/parent_id[rank=variety]/taxonname,
281
originalSubspecies,//taxonconcept/parent_id[rank=subspecies]/taxonname,
282
originalSpecificEpithet,//taxonconcept/parent_id[rank=species]/taxonname,
283
originalGenus,//taxonconcept/parent_id[rank=genus]/taxonname,
284
originalFamily,//taxonconcept/parent_id[rank=family]/taxonname,
285
originalOrder,//taxonconcept/parent_id[rank=order]/taxonname,
286
originalClass,//taxonconcept/parent_id[rank=class]/taxonname,
287
originalPhylum,//taxonconcept/parent_id[rank=phylum]/taxonname,
288
originalKingdom,//taxonconcept/parent_id[rank=kingdom]/taxonname,
256 289
originalPhylum,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/phylum,
257 290
originalTaxonRank,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/rank,
258 291
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,

Also available in: Unified diff