Revision 5306
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 100 | 100 |
<genus>$Genus</genus> |
| 101 | 101 |
<parent_id> |
| 102 | 102 |
<taxonconcept> |
| 103 |
<rank>cultivar</rank> |
|
| 104 | 103 |
<parent_id> |
| 105 | 104 |
<taxonconcept> |
| 106 |
<rank>forma</rank>
|
|
| 105 |
<rank>cultivar</rank>
|
|
| 107 | 106 |
<parent_id> |
| 108 | 107 |
<taxonconcept> |
| 109 |
<rank>variety</rank>
|
|
| 108 |
<rank>forma</rank>
|
|
| 110 | 109 |
<parent_id> |
| 111 | 110 |
<taxonconcept> |
| 112 |
<rank>subspecies</rank>
|
|
| 111 |
<rank>variety</rank>
|
|
| 113 | 112 |
<parent_id> |
| 114 | 113 |
<taxonconcept> |
| 115 |
<rank>species</rank> |
|
| 116 |
<taxonname>$SpecificEpithet</taxonname> |
|
| 114 |
<rank>subspecies</rank> |
|
| 117 | 115 |
<parent_id> |
| 118 | 116 |
<taxonconcept> |
| 119 |
<rank>genus</rank>
|
|
| 120 |
<taxonname>$Genus</taxonname>
|
|
| 117 |
<rank>species</rank>
|
|
| 118 |
<taxonname>$SpecificEpithet</taxonname>
|
|
| 121 | 119 |
<parent_id> |
| 122 | 120 |
<taxonconcept> |
| 123 |
<rank>family</rank> |
|
| 124 |
<taxonname>$Family</taxonname> |
|
| 121 |
<rank>genus</rank> |
|
| 122 |
<taxonname>$Genus</taxonname> |
|
| 123 |
<parent_id> |
|
| 124 |
<taxonconcept> |
|
| 125 |
<rank>family</rank> |
|
| 126 |
<taxonname>$Family</taxonname> |
|
| 127 |
</taxonconcept> |
|
| 128 |
</parent_id> |
|
| 125 | 129 |
</taxonconcept> |
| 126 | 130 |
</parent_id> |
| 127 | 131 |
</taxonconcept> |
| ... | ... | |
| 134 | 138 |
</parent_id> |
| 135 | 139 |
</taxonconcept> |
| 136 | 140 |
</parent_id> |
| 141 |
<taxonname>$InfraspecificEpithet</taxonname> |
|
| 137 | 142 |
</taxonconcept> |
| 138 | 143 |
</parent_id> |
| 139 | 144 |
<species>$SpecificEpithet</species> |
| 140 |
<taxonname>$InfraspecificEpithet</taxonname> |
|
| 141 | 145 |
<taxonomicname>$ScientificName</taxonomicname> |
| 142 | 146 |
</taxonconcept> |
| 143 | 147 |
</taxonconcept_id> |
| ... | ... | |
| 171 | 175 |
<genus>$GBIFGenusOriginal</genus> |
| 172 | 176 |
<parent_id> |
| 173 | 177 |
<taxonconcept> |
| 174 |
<rank>cultivar</rank> |
|
| 175 | 178 |
<parent_id> |
| 176 | 179 |
<taxonconcept> |
| 177 |
<rank>forma</rank>
|
|
| 180 |
<rank>cultivar</rank>
|
|
| 178 | 181 |
<parent_id> |
| 179 | 182 |
<taxonconcept> |
| 180 |
<rank>variety</rank>
|
|
| 183 |
<rank>forma</rank>
|
|
| 181 | 184 |
<parent_id> |
| 182 | 185 |
<taxonconcept> |
| 183 |
<rank>subspecies</rank>
|
|
| 186 |
<rank>variety</rank>
|
|
| 184 | 187 |
<parent_id> |
| 185 | 188 |
<taxonconcept> |
| 186 |
<rank>species</rank> |
|
| 189 |
<rank>subspecies</rank>
|
|
| 187 | 190 |
<parent_id> |
| 188 | 191 |
<taxonconcept> |
| 189 |
<rank>genus</rank> |
|
| 190 |
<taxonname>$GBIFGenusOriginal</taxonname> |
|
| 192 |
<rank>species</rank> |
|
| 191 | 193 |
<parent_id> |
| 192 | 194 |
<taxonconcept> |
| 193 |
<rank>family</rank> |
|
| 194 |
<taxonname>$GBIFFamilyOriginal</taxonname> |
|
| 195 |
<rank>genus</rank> |
|
| 196 |
<taxonname>$GBIFGenusOriginal</taxonname> |
|
| 197 |
<parent_id> |
|
| 198 |
<taxonconcept> |
|
| 199 |
<rank>family</rank> |
|
| 200 |
<taxonname>$GBIFFamilyOriginal</taxonname> |
|
| 201 |
</taxonconcept> |
|
| 202 |
</parent_id> |
|
| 195 | 203 |
</taxonconcept> |
| 196 | 204 |
</parent_id> |
| 197 | 205 |
</taxonconcept> |
| ... | ... | |
| 227 | 235 |
</path> |
| 228 | 236 |
</_simplifyPath> |
| 229 | 237 |
</VegBIEN> |
| 230 |
Inserted 37 new rows into database |
|
| 238 |
Inserted 39 new rows into database |
|
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 34 | 34 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/surname/_namePart/last, |
| 35 | 35 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 36 | 36 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 37 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
| 38 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 39 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 40 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 41 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
| 37 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
|
|
| 38 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 39 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 40 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 41 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname",
|
|
| 42 | 42 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 43 | 43 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 44 | 44 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| inputs/VegBank/taxonobservation_/test.xml.ref | ||
|---|---|---|
| 52 | 52 |
<genus>$Genus</genus> |
| 53 | 53 |
<parent_id> |
| 54 | 54 |
<taxonconcept> |
| 55 |
<rank>cultivar</rank> |
|
| 56 | 55 |
<parent_id> |
| 57 | 56 |
<taxonconcept> |
| 58 |
<rank>forma</rank> |
|
| 59 |
<taxonname>$Forma</taxonname> |
|
| 57 |
<rank>cultivar</rank> |
|
| 60 | 58 |
<parent_id> |
| 61 | 59 |
<taxonconcept> |
| 62 |
<rank>variety</rank>
|
|
| 63 |
<taxonname>$Variety</taxonname>
|
|
| 60 |
<rank>forma</rank>
|
|
| 61 |
<taxonname>$Forma</taxonname>
|
|
| 64 | 62 |
<parent_id> |
| 65 | 63 |
<taxonconcept> |
| 66 |
<rank>subspecies</rank>
|
|
| 67 |
<taxonname>$Subspecies</taxonname>
|
|
| 64 |
<rank>variety</rank>
|
|
| 65 |
<taxonname>$Variety</taxonname>
|
|
| 68 | 66 |
<parent_id> |
| 69 | 67 |
<taxonconcept> |
| 70 |
<rank>species</rank> |
|
| 71 |
<taxonname>$Species</taxonname> |
|
| 68 |
<rank>subspecies</rank>
|
|
| 69 |
<taxonname>$Subspecies</taxonname>
|
|
| 72 | 70 |
<parent_id> |
| 73 | 71 |
<taxonconcept> |
| 74 |
<rank>genus</rank>
|
|
| 75 |
<taxonname>$Genus</taxonname>
|
|
| 72 |
<rank>species</rank>
|
|
| 73 |
<taxonname>$Species</taxonname>
|
|
| 76 | 74 |
<parent_id> |
| 77 | 75 |
<taxonconcept> |
| 78 |
<rank>family</rank>
|
|
| 79 |
<taxonname>$Family</taxonname>
|
|
| 76 |
<rank>genus</rank>
|
|
| 77 |
<taxonname>$Genus</taxonname>
|
|
| 80 | 78 |
<parent_id> |
| 81 | 79 |
<taxonconcept> |
| 82 |
<rank>order</rank>
|
|
| 83 |
<taxonname>$Order</taxonname>
|
|
| 80 |
<rank>family</rank>
|
|
| 81 |
<taxonname>$Family</taxonname>
|
|
| 84 | 82 |
<parent_id> |
| 85 | 83 |
<taxonconcept> |
| 86 |
<rank>class</rank>
|
|
| 87 |
<taxonname>$Class</taxonname>
|
|
| 84 |
<rank>order</rank>
|
|
| 85 |
<taxonname>$Order</taxonname>
|
|
| 88 | 86 |
<parent_id> |
| 89 | 87 |
<taxonconcept> |
| 90 |
<rank>phylum</rank> |
|
| 88 |
<rank>class</rank> |
|
| 89 |
<taxonname>$Class</taxonname> |
|
| 91 | 90 |
<parent_id> |
| 92 | 91 |
<taxonconcept> |
| 93 |
<rank>kingdom</rank> |
|
| 94 |
<taxonname>$Kingdom</taxonname> |
|
| 92 |
<rank>phylum</rank> |
|
| 93 |
<parent_id> |
|
| 94 |
<taxonconcept> |
|
| 95 |
<rank>kingdom</rank> |
|
| 96 |
<taxonname>$Kingdom</taxonname> |
|
| 97 |
</taxonconcept> |
|
| 98 |
</parent_id> |
|
| 95 | 99 |
</taxonconcept> |
| 96 | 100 |
</parent_id> |
| 97 | 101 |
</taxonconcept> |
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 15 | 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
| 16 | 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 17 | 17 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 18 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 19 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 18 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 19 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 20 | 20 |
locality,/location/locationnarrative/_merge/1, |
| 21 | 21 |
continent,/location/locationplace/*_id/placepath/continent, |
| 22 | 22 |
basisOfRecord,,** No join mapping for basisOfRecord ** |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 62 | 62 |
<genus>$genus</genus> |
| 63 | 63 |
<parent_id> |
| 64 | 64 |
<taxonconcept> |
| 65 |
<rank>cultivar</rank> |
|
| 66 | 65 |
<parent_id> |
| 67 | 66 |
<taxonconcept> |
| 68 |
<rank>forma</rank>
|
|
| 67 |
<rank>cultivar</rank>
|
|
| 69 | 68 |
<parent_id> |
| 70 | 69 |
<taxonconcept> |
| 71 |
<rank>variety</rank>
|
|
| 70 |
<rank>forma</rank>
|
|
| 72 | 71 |
<parent_id> |
| 73 | 72 |
<taxonconcept> |
| 74 |
<rank>subspecies</rank>
|
|
| 73 |
<rank>variety</rank>
|
|
| 75 | 74 |
<parent_id> |
| 76 | 75 |
<taxonconcept> |
| 77 |
<rank>species</rank> |
|
| 76 |
<rank>subspecies</rank>
|
|
| 78 | 77 |
<parent_id> |
| 79 | 78 |
<taxonconcept> |
| 80 |
<rank>genus</rank> |
|
| 81 |
<taxonname>$genus</taxonname> |
|
| 79 |
<rank>species</rank> |
|
| 82 | 80 |
<parent_id> |
| 83 | 81 |
<taxonconcept> |
| 84 |
<rank>family</rank> |
|
| 85 |
<taxonname>$family</taxonname> |
|
| 82 |
<rank>genus</rank> |
|
| 83 |
<taxonname>$genus</taxonname> |
|
| 84 |
<parent_id> |
|
| 85 |
<taxonconcept> |
|
| 86 |
<rank>family</rank> |
|
| 87 |
<taxonname>$family</taxonname> |
|
| 88 |
</taxonconcept> |
|
| 89 |
</parent_id> |
|
| 86 | 90 |
</taxonconcept> |
| 87 | 91 |
</parent_id> |
| 88 | 92 |
</taxonconcept> |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 35 | 35 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/surname/_namePart/last, |
| 36 | 36 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 37 | 37 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 38 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
| 39 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 40 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 41 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 42 |
darwin:Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
| 43 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
| 44 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
| 45 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
| 38 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
|
|
| 39 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 40 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 41 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 42 |
darwin:Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname",
|
|
| 43 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname",
|
|
| 44 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname",
|
|
| 45 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname",
|
|
| 46 | 46 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 47 | 47 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 48 | 48 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 25 | 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
| 26 | 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 27 | 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 31 | 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 32 | 32 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 33 | 33 |
Comments,,** No join mapping for *Comments ** |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 65 | 65 |
<genus>$Genus</genus> |
| 66 | 66 |
<parent_id> |
| 67 | 67 |
<taxonconcept> |
| 68 |
<rank>cultivar</rank> |
|
| 69 | 68 |
<parent_id> |
| 70 | 69 |
<taxonconcept> |
| 71 |
<rank>forma</rank>
|
|
| 70 |
<rank>cultivar</rank>
|
|
| 72 | 71 |
<parent_id> |
| 73 | 72 |
<taxonconcept> |
| 74 |
<rank>variety</rank>
|
|
| 73 |
<rank>forma</rank>
|
|
| 75 | 74 |
<parent_id> |
| 76 | 75 |
<taxonconcept> |
| 77 |
<rank>subspecies</rank>
|
|
| 76 |
<rank>variety</rank>
|
|
| 78 | 77 |
<parent_id> |
| 79 | 78 |
<taxonconcept> |
| 80 |
<rank>species</rank> |
|
| 81 |
<taxonname>$Species</taxonname> |
|
| 79 |
<rank>subspecies</rank> |
|
| 82 | 80 |
<parent_id> |
| 83 | 81 |
<taxonconcept> |
| 84 |
<rank>genus</rank>
|
|
| 85 |
<taxonname>$Genus</taxonname>
|
|
| 82 |
<rank>species</rank>
|
|
| 83 |
<taxonname>$Species</taxonname>
|
|
| 86 | 84 |
<parent_id> |
| 87 | 85 |
<taxonconcept> |
| 88 |
<rank>family</rank> |
|
| 89 |
<taxonname>$Family</taxonname> |
|
| 86 |
<rank>genus</rank> |
|
| 87 |
<taxonname>$Genus</taxonname> |
|
| 88 |
<parent_id> |
|
| 89 |
<taxonconcept> |
|
| 90 |
<rank>family</rank> |
|
| 91 |
<taxonname>$Family</taxonname> |
|
| 92 |
</taxonconcept> |
|
| 93 |
</parent_id> |
|
| 90 | 94 |
</taxonconcept> |
| 91 | 95 |
</parent_id> |
| 92 | 96 |
</taxonconcept> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 25 | 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
| 26 | 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 27 | 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 31 | 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 32 | 32 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 33 | 33 |
Comments,,** No join mapping for *Comments ** |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 65 | 65 |
<genus>$Genus</genus> |
| 66 | 66 |
<parent_id> |
| 67 | 67 |
<taxonconcept> |
| 68 |
<rank>cultivar</rank> |
|
| 69 | 68 |
<parent_id> |
| 70 | 69 |
<taxonconcept> |
| 71 |
<rank>forma</rank>
|
|
| 70 |
<rank>cultivar</rank>
|
|
| 72 | 71 |
<parent_id> |
| 73 | 72 |
<taxonconcept> |
| 74 |
<rank>variety</rank>
|
|
| 73 |
<rank>forma</rank>
|
|
| 75 | 74 |
<parent_id> |
| 76 | 75 |
<taxonconcept> |
| 77 |
<rank>subspecies</rank>
|
|
| 76 |
<rank>variety</rank>
|
|
| 78 | 77 |
<parent_id> |
| 79 | 78 |
<taxonconcept> |
| 80 |
<rank>species</rank> |
|
| 81 |
<taxonname>$Species</taxonname> |
|
| 79 |
<rank>subspecies</rank> |
|
| 82 | 80 |
<parent_id> |
| 83 | 81 |
<taxonconcept> |
| 84 |
<rank>genus</rank>
|
|
| 85 |
<taxonname>$Genus</taxonname>
|
|
| 82 |
<rank>species</rank>
|
|
| 83 |
<taxonname>$Species</taxonname>
|
|
| 86 | 84 |
<parent_id> |
| 87 | 85 |
<taxonconcept> |
| 88 |
<rank>family</rank> |
|
| 89 |
<taxonname>$Family</taxonname> |
|
| 86 |
<rank>genus</rank> |
|
| 87 |
<taxonname>$Genus</taxonname> |
|
| 88 |
<parent_id> |
|
| 89 |
<taxonconcept> |
|
| 90 |
<rank>family</rank> |
|
| 91 |
<taxonname>$Family</taxonname> |
|
| 92 |
</taxonconcept> |
|
| 93 |
</parent_id> |
|
| 90 | 94 |
</taxonconcept> |
| 91 | 95 |
</parent_id> |
| 92 | 96 |
</taxonconcept> |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 40 | 40 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/surname/_namePart/last, |
| 41 | 41 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 42 | 42 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 43 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
| 44 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 45 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 46 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 47 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
| 48 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
| 49 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
| 50 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
| 43 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
|
|
| 44 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 45 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 46 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 47 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname",
|
|
| 48 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname",
|
|
| 49 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname",
|
|
| 50 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname",
|
|
| 51 | 51 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 52 | 52 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 53 | 53 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 160 | 160 |
<genus>$Genus</genus> |
| 161 | 161 |
<parent_id> |
| 162 | 162 |
<taxonconcept> |
| 163 |
<rank>cultivar</rank> |
|
| 164 | 163 |
<parent_id> |
| 165 | 164 |
<taxonconcept> |
| 166 |
<rank>forma</rank>
|
|
| 165 |
<rank>cultivar</rank>
|
|
| 167 | 166 |
<parent_id> |
| 168 | 167 |
<taxonconcept> |
| 169 |
<rank>variety</rank>
|
|
| 168 |
<rank>forma</rank>
|
|
| 170 | 169 |
<parent_id> |
| 171 | 170 |
<taxonconcept> |
| 172 |
<rank>subspecies</rank> |
|
| 173 |
<taxonname>$Subspecies</taxonname> |
|
| 171 |
<rank>variety</rank> |
|
| 174 | 172 |
<parent_id> |
| 175 | 173 |
<taxonconcept> |
| 176 |
<rank>species</rank> |
|
| 177 |
<taxonname>$Species</taxonname> |
|
| 174 |
<rank>subspecies</rank>
|
|
| 175 |
<taxonname>$Subspecies</taxonname>
|
|
| 178 | 176 |
<parent_id> |
| 179 | 177 |
<taxonconcept> |
| 180 |
<rank>genus</rank>
|
|
| 181 |
<taxonname>$Genus</taxonname>
|
|
| 178 |
<rank>species</rank>
|
|
| 179 |
<taxonname>$Species</taxonname>
|
|
| 182 | 180 |
<parent_id> |
| 183 | 181 |
<taxonconcept> |
| 184 |
<rank>family</rank>
|
|
| 185 |
<taxonname>$Family</taxonname>
|
|
| 182 |
<rank>genus</rank>
|
|
| 183 |
<taxonname>$Genus</taxonname>
|
|
| 186 | 184 |
<parent_id> |
| 187 | 185 |
<taxonconcept> |
| 188 |
<rank>order</rank>
|
|
| 189 |
<taxonname>$Order</taxonname>
|
|
| 186 |
<rank>family</rank>
|
|
| 187 |
<taxonname>$Family</taxonname>
|
|
| 190 | 188 |
<parent_id> |
| 191 | 189 |
<taxonconcept> |
| 192 |
<rank>class</rank>
|
|
| 193 |
<taxonname>$Class</taxonname>
|
|
| 190 |
<rank>order</rank>
|
|
| 191 |
<taxonname>$Order</taxonname>
|
|
| 194 | 192 |
<parent_id> |
| 195 | 193 |
<taxonconcept> |
| 196 |
<rank>phylum</rank>
|
|
| 197 |
<taxonname>$Phylum</taxonname>
|
|
| 194 |
<rank>class</rank>
|
|
| 195 |
<taxonname>$Class</taxonname>
|
|
| 198 | 196 |
<parent_id> |
| 199 | 197 |
<taxonconcept> |
| 200 |
<rank>kingdom</rank> |
|
| 201 |
<taxonname>$Kingdom</taxonname> |
|
| 198 |
<rank>phylum</rank> |
|
| 199 |
<taxonname>$Phylum</taxonname> |
|
| 200 |
<parent_id> |
|
| 201 |
<taxonconcept> |
|
| 202 |
<rank>kingdom</rank> |
|
| 203 |
<taxonname>$Kingdom</taxonname> |
|
| 204 |
</taxonconcept> |
|
| 205 |
</parent_id> |
|
| 202 | 206 |
</taxonconcept> |
| 203 | 207 |
</parent_id> |
| 204 | 208 |
</taxonconcept> |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 44 | 44 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/surname/_namePart/last, |
| 45 | 45 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 46 | 46 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 47 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 48 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 49 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 47 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 48 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 49 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 50 | 50 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 51 | 51 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,"Contains less than ""Specie+autor""" |
| 52 | 52 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor, |
| ... | ... | |
| 55 | 55 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera |
| 56 | 56 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family, |
| 57 | 57 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,Often = Genera |
| 58 |
Field name,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",Often = Genera |
|
| 59 |
Field family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 58 |
Field name,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",Often = Genera
|
|
| 59 |
Field family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 60 | 60 |
Index collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 61 | 61 |
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 62 | 62 |
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate" |
| inputs/Madidi/Organism/test.xml.ref | ||
|---|---|---|
| 119 | 119 |
<genus>$Genera</genus> |
| 120 | 120 |
<parent_id> |
| 121 | 121 |
<taxonconcept> |
| 122 |
<rank>cultivar</rank> |
|
| 123 | 122 |
<parent_id> |
| 124 | 123 |
<taxonconcept> |
| 125 |
<rank>forma</rank>
|
|
| 124 |
<rank>cultivar</rank>
|
|
| 126 | 125 |
<parent_id> |
| 127 | 126 |
<taxonconcept> |
| 128 |
<rank>variety</rank>
|
|
| 127 |
<rank>forma</rank>
|
|
| 129 | 128 |
<parent_id> |
| 130 | 129 |
<taxonconcept> |
| 131 |
<rank>subspecies</rank>
|
|
| 130 |
<rank>variety</rank>
|
|
| 132 | 131 |
<parent_id> |
| 133 | 132 |
<taxonconcept> |
| 134 |
<rank>species</rank> |
|
| 135 |
<taxonname>$Specific epithet</taxonname> |
|
| 133 |
<rank>subspecies</rank> |
|
| 136 | 134 |
<parent_id> |
| 137 | 135 |
<taxonconcept> |
| 138 |
<rank>genus</rank>
|
|
| 139 |
<taxonname>$Genera</taxonname>
|
|
| 136 |
<rank>species</rank>
|
|
| 137 |
<taxonname>$Specific epithet</taxonname>
|
|
| 140 | 138 |
<parent_id> |
| 141 | 139 |
<taxonconcept> |
| 142 |
<rank>family</rank> |
|
| 143 |
<taxonname>$Family (revised)</taxonname> |
|
| 140 |
<rank>genus</rank> |
|
| 141 |
<taxonname>$Genera</taxonname> |
|
| 142 |
<parent_id> |
|
| 143 |
<taxonconcept> |
|
| 144 |
<rank>family</rank> |
|
| 145 |
<taxonname>$Family (revised)</taxonname> |
|
| 146 |
</taxonconcept> |
|
| 147 |
</parent_id> |
|
| 144 | 148 |
</taxonconcept> |
| 145 | 149 |
</parent_id> |
| 146 | 150 |
</taxonconcept> |
| ... | ... | |
| 186 | 190 |
<genus>$Field name</genus> |
| 187 | 191 |
<parent_id> |
| 188 | 192 |
<taxonconcept> |
| 189 |
<rank>cultivar</rank> |
|
| 190 | 193 |
<parent_id> |
| 191 | 194 |
<taxonconcept> |
| 192 |
<rank>forma</rank>
|
|
| 195 |
<rank>cultivar</rank>
|
|
| 193 | 196 |
<parent_id> |
| 194 | 197 |
<taxonconcept> |
| 195 |
<rank>variety</rank>
|
|
| 198 |
<rank>forma</rank>
|
|
| 196 | 199 |
<parent_id> |
| 197 | 200 |
<taxonconcept> |
| 198 |
<rank>subspecies</rank>
|
|
| 201 |
<rank>variety</rank>
|
|
| 199 | 202 |
<parent_id> |
| 200 | 203 |
<taxonconcept> |
| 201 |
<rank>species</rank> |
|
| 204 |
<rank>subspecies</rank>
|
|
| 202 | 205 |
<parent_id> |
| 203 | 206 |
<taxonconcept> |
| 204 |
<rank>genus</rank> |
|
| 205 |
<taxonname>$Field name</taxonname> |
|
| 207 |
<rank>species</rank> |
|
| 206 | 208 |
<parent_id> |
| 207 | 209 |
<taxonconcept> |
| 208 |
<rank>family</rank> |
|
| 209 |
<taxonname>$Field family</taxonname> |
|
| 210 |
<rank>genus</rank> |
|
| 211 |
<taxonname>$Field name</taxonname> |
|
| 212 |
<parent_id> |
|
| 213 |
<taxonconcept> |
|
| 214 |
<rank>family</rank> |
|
| 215 |
<taxonname>$Field family</taxonname> |
|
| 216 |
</taxonconcept> |
|
| 217 |
</parent_id> |
|
| 210 | 218 |
</taxonconcept> |
| 211 | 219 |
</parent_id> |
| 212 | 220 |
</taxonconcept> |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 54 | 54 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author, |
| 55 | 55 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 56 | 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 57 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 58 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 59 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 57 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 58 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 59 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 60 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/rank/_alt/1, |
|
| 61 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/rank/_alt/2, |
|
| 62 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonname, |
|
| 63 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/verbatimrank/_alt/1, |
|
| 64 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/verbatimrank/_alt/2, |
|
| 60 | 65 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank/_alt/1, |
| 61 | 66 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank/_alt/2, |
| 62 | 67 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 63 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 64 | 68 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 65 | 69 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank/_alt/1, |
| 66 | 70 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank/_alt/2, |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 120 | 120 |
<genus>$genus</genus> |
| 121 | 121 |
<parent_id> |
| 122 | 122 |
<taxonconcept> |
| 123 |
<rank>cultivar</rank> |
|
| 124 | 123 |
<parent_id> |
| 125 | 124 |
<taxonconcept> |
| 126 |
<rank>forma</rank>
|
|
| 125 |
<rank>cultivar</rank>
|
|
| 127 | 126 |
<parent_id> |
| 128 | 127 |
<taxonconcept> |
| 129 |
<rank>variety</rank>
|
|
| 128 |
<rank>forma</rank>
|
|
| 130 | 129 |
<parent_id> |
| 131 | 130 |
<taxonconcept> |
| 132 |
<rank>subspecies</rank>
|
|
| 131 |
<rank>variety</rank>
|
|
| 133 | 132 |
<parent_id> |
| 134 | 133 |
<taxonconcept> |
| 135 |
<rank>species</rank> |
|
| 136 |
<taxonname>$species</taxonname> |
|
| 134 |
<rank>subspecies</rank> |
|
| 137 | 135 |
<parent_id> |
| 138 | 136 |
<taxonconcept> |
| 139 |
<rank>genus</rank>
|
|
| 140 |
<taxonname>$genus</taxonname>
|
|
| 137 |
<rank>species</rank>
|
|
| 138 |
<taxonname>$species</taxonname>
|
|
| 141 | 139 |
<parent_id> |
| 142 | 140 |
<taxonconcept> |
| 143 |
<rank>family</rank> |
|
| 144 |
<taxonname>$family</taxonname> |
|
| 141 |
<rank>genus</rank> |
|
| 142 |
<taxonname>$genus</taxonname> |
|
| 143 |
<parent_id> |
|
| 144 |
<taxonconcept> |
|
| 145 |
<rank>family</rank> |
|
| 146 |
<taxonname>$family</taxonname> |
|
| 147 |
</taxonconcept> |
|
| 148 |
</parent_id> |
|
| 145 | 149 |
</taxonconcept> |
| 146 | 150 |
</parent_id> |
| 147 | 151 |
</taxonconcept> |
| ... | ... | |
| 154 | 158 |
</parent_id> |
| 155 | 159 |
</taxonconcept> |
| 156 | 160 |
</parent_id> |
| 161 |
<rank> |
|
| 162 |
<_alt> |
|
| 163 |
<1>$usdaRank</1> |
|
| 164 |
<2>$infrarank</2> |
|
| 165 |
</_alt> |
|
| 166 |
</rank> |
|
| 167 |
<taxonname>$infraname</taxonname> |
|
| 168 |
<verbatimrank> |
|
| 169 |
<_alt> |
|
| 170 |
<1>$usdaRank</1> |
|
| 171 |
<2>$infrarank</2> |
|
| 172 |
</_alt> |
|
| 173 |
</verbatimrank> |
|
| 157 | 174 |
</taxonconcept> |
| 158 | 175 |
</parent_id> |
| 159 | 176 |
<rank> |
| ... | ... | |
| 163 | 180 |
</_alt> |
| 164 | 181 |
</rank> |
| 165 | 182 |
<species>$species</species> |
| 166 |
<taxonname>$infraname</taxonname> |
|
| 167 | 183 |
<taxonomicname>$SciName</taxonomicname> |
| 168 | 184 |
<verbatimrank> |
| 169 | 185 |
<_alt> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/surname/_namePart/last, |
| 37 | 37 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 38 | 38 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 39 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 40 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 41 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 42 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
| 43 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
| 44 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
| 45 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
| 39 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 40 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 41 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 42 |
order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
|
| 43 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
|
| 44 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
|
| 45 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
|
| 46 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/rank, |
|
| 47 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonname, |
|
| 48 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/verbatimrank, |
|
| 46 | 49 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 47 | 50 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 48 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 49 | 51 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor, |
| 50 | 52 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 51 | 53 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 130 | 130 |
<genus>$genus</genus> |
| 131 | 131 |
<parent_id> |
| 132 | 132 |
<taxonconcept> |
| 133 |
<rank>cultivar</rank> |
|
| 134 | 133 |
<parent_id> |
| 135 | 134 |
<taxonconcept> |
| 136 |
<rank>forma</rank>
|
|
| 135 |
<rank>cultivar</rank>
|
|
| 137 | 136 |
<parent_id> |
| 138 | 137 |
<taxonconcept> |
| 139 |
<rank>variety</rank>
|
|
| 138 |
<rank>forma</rank>
|
|
| 140 | 139 |
<parent_id> |
| 141 | 140 |
<taxonconcept> |
| 142 |
<rank>subspecies</rank>
|
|
| 141 |
<rank>variety</rank>
|
|
| 143 | 142 |
<parent_id> |
| 144 | 143 |
<taxonconcept> |
| 145 |
<rank>species</rank> |
|
| 146 |
<taxonname>$specificEpithet</taxonname> |
|
| 144 |
<rank>subspecies</rank> |
|
| 147 | 145 |
<parent_id> |
| 148 | 146 |
<taxonconcept> |
| 149 |
<rank>genus</rank>
|
|
| 150 |
<taxonname>$genus</taxonname>
|
|
| 147 |
<rank>species</rank>
|
|
| 148 |
<taxonname>$specificEpithet</taxonname>
|
|
| 151 | 149 |
<parent_id> |
| 152 | 150 |
<taxonconcept> |
| 153 |
<rank>family</rank>
|
|
| 154 |
<taxonname>$family</taxonname>
|
|
| 151 |
<rank>genus</rank>
|
|
| 152 |
<taxonname>$genus</taxonname>
|
|
| 155 | 153 |
<parent_id> |
| 156 | 154 |
<taxonconcept> |
| 157 |
<rank>order</rank>
|
|
| 158 |
<taxonname>$order</taxonname>
|
|
| 155 |
<rank>family</rank>
|
|
| 156 |
<taxonname>$family</taxonname>
|
|
| 159 | 157 |
<parent_id> |
| 160 | 158 |
<taxonconcept> |
| 161 |
<rank>class</rank>
|
|
| 162 |
<taxonname>$class</taxonname>
|
|
| 159 |
<rank>order</rank>
|
|
| 160 |
<taxonname>$order</taxonname>
|
|
| 163 | 161 |
<parent_id> |
| 164 | 162 |
<taxonconcept> |
| 165 |
<rank>phylum</rank>
|
|
| 166 |
<taxonname>$phylum</taxonname>
|
|
| 163 |
<rank>class</rank>
|
|
| 164 |
<taxonname>$class</taxonname>
|
|
| 167 | 165 |
<parent_id> |
| 168 | 166 |
<taxonconcept> |
| 169 |
<rank>kingdom</rank> |
|
| 170 |
<taxonname>$kingdom</taxonname> |
|
| 167 |
<rank>phylum</rank> |
|
| 168 |
<taxonname>$phylum</taxonname> |
|
| 169 |
<parent_id> |
|
| 170 |
<taxonconcept> |
|
| 171 |
<rank>kingdom</rank> |
|
| 172 |
<taxonname>$kingdom</taxonname> |
|
| 173 |
</taxonconcept> |
|
| 174 |
</parent_id> |
|
| 171 | 175 |
</taxonconcept> |
| 172 | 176 |
</parent_id> |
| 173 | 177 |
</taxonconcept> |
| ... | ... | |
| 188 | 192 |
</parent_id> |
| 189 | 193 |
</taxonconcept> |
| 190 | 194 |
</parent_id> |
| 195 |
<rank>$taxonRank</rank> |
|
| 196 |
<taxonname>$infraspecificEpithet</taxonname> |
|
| 197 |
<verbatimrank>$taxonRank</verbatimrank> |
|
| 191 | 198 |
</taxonconcept> |
| 192 | 199 |
</parent_id> |
| 193 | 200 |
<rank>$taxonRank</rank> |
| 194 | 201 |
<species>$specificEpithet</species> |
| 195 |
<taxonname>$infraspecificEpithet</taxonname> |
|
| 196 | 202 |
<taxonomicnamewithauthor>$scientificName</taxonomicnamewithauthor> |
| 197 | 203 |
<verbatimrank>$taxonRank</verbatimrank> |
| 198 | 204 |
</taxonconcept> |
| ... | ... | |
| 228 | 234 |
</path> |
| 229 | 235 |
</_simplifyPath> |
| 230 | 236 |
</VegBIEN> |
| 231 |
Inserted 34 new rows into database |
|
| 237 |
Inserted 35 new rows into database |
|
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 74 | 74 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,Brad: This is the author of the scientificName. |
| 75 | 75 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 76 | 76 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 77 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 78 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 79 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 77 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 78 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 79 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 80 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/rank, |
|
| 81 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonname, |
|
| 82 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/verbatimrank, |
|
| 80 | 83 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 81 | 84 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 82 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_alt/1, |
|
| 83 | 85 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank, |
| 84 | 86 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 85 | 87 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
| 86 | 88 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
| 87 | 89 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,Brad: OMIT |
| 88 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",Brad: OMIT |
|
| 89 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Brad: OMIT |
|
| 90 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",Brad: OMIT
|
|
| 91 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",Brad: OMIT
|
|
| 90 | 92 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,Brad: OMIT |
| 91 | 93 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| 92 | 94 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
|---|---|---|
| 185 | 185 |
<genus>$genus</genus> |
| 186 | 186 |
<parent_id> |
| 187 | 187 |
<taxonconcept> |
| 188 |
<rank>cultivar</rank> |
|
| 189 | 188 |
<parent_id> |
| 190 | 189 |
<taxonconcept> |
| 191 |
<rank>forma</rank>
|
|
| 190 |
<rank>cultivar</rank>
|
|
| 192 | 191 |
<parent_id> |
| 193 | 192 |
<taxonconcept> |
| 194 |
<rank>variety</rank>
|
|
| 193 |
<rank>forma</rank>
|
|
| 195 | 194 |
<parent_id> |
| 196 | 195 |
<taxonconcept> |
| 197 |
<rank>subspecies</rank>
|
|
| 196 |
<rank>variety</rank>
|
|
| 198 | 197 |
<parent_id> |
| 199 | 198 |
<taxonconcept> |
| 200 |
<rank>species</rank> |
|
| 201 |
<taxonname>$specific_epithet</taxonname> |
|
| 199 |
<rank>subspecies</rank> |
|
| 202 | 200 |
<parent_id> |
| 203 | 201 |
<taxonconcept> |
| 204 |
<rank>genus</rank>
|
|
| 205 |
<taxonname>$genus</taxonname>
|
|
| 202 |
<rank>species</rank>
|
|
| 203 |
<taxonname>$specific_epithet</taxonname>
|
|
| 206 | 204 |
<parent_id> |
| 207 | 205 |
<taxonconcept> |
| 208 |
<rank>family</rank> |
|
| 209 |
<taxonname>$family</taxonname> |
|
| 206 |
<rank>genus</rank> |
|
| 207 |
<taxonname>$genus</taxonname> |
|
| 208 |
<parent_id> |
|
| 209 |
<taxonconcept> |
|
| 210 |
<rank>family</rank> |
|
| 211 |
<taxonname>$family</taxonname> |
|
| 212 |
</taxonconcept> |
|
| 213 |
</parent_id> |
|
| 210 | 214 |
</taxonconcept> |
| 211 | 215 |
</parent_id> |
| 212 | 216 |
</taxonconcept> |
| ... | ... | |
| 219 | 223 |
</parent_id> |
| 220 | 224 |
</taxonconcept> |
| 221 | 225 |
</parent_id> |
| 226 |
<rank>$infra_rank_1</rank> |
|
| 227 |
<taxonname>$infra_ep_1</taxonname> |
|
| 228 |
<verbatimrank>$infra_rank_1</verbatimrank> |
|
| 222 | 229 |
</taxonconcept> |
| 223 | 230 |
</parent_id> |
| 224 | 231 |
<rank>$infra_rank_1</rank> |
| 225 | 232 |
<species>$specific_epithet</species> |
| 226 |
<taxonname>$infra_ep_1</taxonname> |
|
| 227 | 233 |
<verbatimrank>$infra_rank_1</verbatimrank> |
| 228 | 234 |
</taxonconcept> |
| 229 | 235 |
</taxonconcept_id> |
| ... | ... | |
| 252 | 258 |
<family>$orig_family</family> |
| 253 | 259 |
<parent_id> |
| 254 | 260 |
<taxonconcept> |
| 255 |
<rank>cultivar</rank> |
|
| 256 | 261 |
<parent_id> |
| 257 | 262 |
<taxonconcept> |
| 258 |
<rank>forma</rank>
|
|
| 263 |
<rank>cultivar</rank>
|
|
| 259 | 264 |
<parent_id> |
| 260 | 265 |
<taxonconcept> |
| 261 |
<rank>variety</rank>
|
|
| 266 |
<rank>forma</rank>
|
|
| 262 | 267 |
<parent_id> |
| 263 | 268 |
<taxonconcept> |
| 264 |
<rank>subspecies</rank>
|
|
| 269 |
<rank>variety</rank>
|
|
| 265 | 270 |
<parent_id> |
| 266 | 271 |
<taxonconcept> |
| 267 |
<rank>species</rank> |
|
| 268 |
<taxonname>$orig_species</taxonname> |
|
| 272 |
<rank>subspecies</rank> |
|
| 269 | 273 |
<parent_id> |
| 270 | 274 |
<taxonconcept> |
| 271 |
<rank>genus</rank> |
|
| 275 |
<rank>species</rank> |
|
| 276 |
<taxonname>$orig_species</taxonname> |
|
| 272 | 277 |
<parent_id> |
| 273 | 278 |
<taxonconcept> |
| 274 |
<rank>family</rank> |
|
| 275 |
<taxonname>$orig_family</taxonname> |
|
| 279 |
<rank>genus</rank> |
|
| 280 |
<parent_id> |
|
| 281 |
<taxonconcept> |
|
| 282 |
<rank>family</rank> |
|
| 283 |
<taxonname>$orig_family</taxonname> |
|
| 284 |
</taxonconcept> |
|
| 285 |
</parent_id> |
|
| 276 | 286 |
</taxonconcept> |
| 277 | 287 |
</parent_id> |
| 278 | 288 |
</taxonconcept> |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
| 39 | 39 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 40 | 40 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 41 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 42 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 43 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 41 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 42 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 43 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 44 | 44 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 45 | 45 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 46 | 46 |
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| inputs/REMIB/Specimen/test.xml.ref | ||
|---|---|---|
| 85 | 85 |
<genus>$genus</genus> |
| 86 | 86 |
<parent_id> |
| 87 | 87 |
<taxonconcept> |
| 88 |
<rank>cultivar</rank> |
|
| 89 | 88 |
<parent_id> |
| 90 | 89 |
<taxonconcept> |
| 91 |
<rank>forma</rank>
|
|
| 90 |
<rank>cultivar</rank>
|
|
| 92 | 91 |
<parent_id> |
| 93 | 92 |
<taxonconcept> |
| 94 |
<rank>variety</rank>
|
|
| 93 |
<rank>forma</rank>
|
|
| 95 | 94 |
<parent_id> |
| 96 | 95 |
<taxonconcept> |
| 97 |
<rank>subspecies</rank>
|
|
| 96 |
<rank>variety</rank>
|
|
| 98 | 97 |
<parent_id> |
| 99 | 98 |
<taxonconcept> |
| 100 |
<rank>species</rank> |
|
| 101 |
<taxonname>$specificEpithet</taxonname> |
|
| 99 |
<rank>subspecies</rank> |
|
| 102 | 100 |
<parent_id> |
| 103 | 101 |
<taxonconcept> |
| 104 |
<rank>genus</rank>
|
|
| 105 |
<taxonname>$genus</taxonname>
|
|
| 102 |
<rank>species</rank>
|
|
| 103 |
<taxonname>$specificEpithet</taxonname>
|
|
| 106 | 104 |
<parent_id> |
| 107 | 105 |
<taxonconcept> |
| 108 |
<rank>family</rank> |
|
| 109 |
<taxonname>$family</taxonname> |
|
| 106 |
<rank>genus</rank> |
|
| 107 |
<taxonname>$genus</taxonname> |
|
| 108 |
<parent_id> |
|
| 109 |
<taxonconcept> |
|
| 110 |
<rank>family</rank> |
|
| 111 |
<taxonname>$family</taxonname> |
|
| 112 |
</taxonconcept> |
|
| 113 |
</parent_id> |
|
| 110 | 114 |
</taxonconcept> |
| 111 | 115 |
</parent_id> |
| 112 | 116 |
</taxonconcept> |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 29 | 29 |
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author, |
| 30 | 30 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 31 | 31 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 32 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
| 33 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 34 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 32 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
|
|
| 33 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 34 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 36 | 36 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 37 | 37 |
Description,,** No join mapping for *Description ** |
| 38 | 38 |
ExactDate,,** No join mapping for *ExactDate ** |
| inputs/CTFS/StemObservation/test.xml.ref | ||
|---|---|---|
| 69 | 69 |
<genus>$Genus</genus> |
| 70 | 70 |
<parent_id> |
| 71 | 71 |
<taxonconcept> |
| 72 |
<rank>cultivar</rank> |
|
| 73 | 72 |
<parent_id> |
| 74 | 73 |
<taxonconcept> |
| 75 |
<rank>forma</rank>
|
|
| 74 |
<rank>cultivar</rank>
|
|
| 76 | 75 |
<parent_id> |
| 77 | 76 |
<taxonconcept> |
| 78 |
<rank>variety</rank>
|
|
| 77 |
<rank>forma</rank>
|
|
| 79 | 78 |
<parent_id> |
| 80 | 79 |
<taxonconcept> |
| 81 |
<rank>subspecies</rank> |
|
| 82 |
<taxonname>$SubSpeciesName</taxonname> |
|
| 80 |
<rank>variety</rank> |
|
| 83 | 81 |
<parent_id> |
| 84 | 82 |
<taxonconcept> |
| 85 |
<rank>species</rank> |
|
| 86 |
<taxonname>$SpeciesName</taxonname> |
|
| 83 |
<rank>subspecies</rank>
|
|
| 84 |
<taxonname>$SubSpeciesName</taxonname>
|
|
| 87 | 85 |
<parent_id> |
| 88 | 86 |
<taxonconcept> |
| 89 |
<rank>genus</rank>
|
|
| 90 |
<taxonname>$Genus</taxonname>
|
|
| 87 |
<rank>species</rank>
|
|
| 88 |
<taxonname>$SpeciesName</taxonname>
|
|
| 91 | 89 |
<parent_id> |
| 92 | 90 |
<taxonconcept> |
| 93 |
<rank>family</rank> |
|
| 94 |
<taxonname>$Family</taxonname> |
|
| 91 |
<rank>genus</rank> |
|
| 92 |
<taxonname>$Genus</taxonname> |
|
| 93 |
<parent_id> |
|
| 94 |
<taxonconcept> |
|
| 95 |
<rank>family</rank> |
|
| 96 |
<taxonname>$Family</taxonname> |
|
| 97 |
</taxonconcept> |
|
| 98 |
</parent_id> |
|
| 95 | 99 |
</taxonconcept> |
| 96 | 100 |
</parent_id> |
| 97 | 101 |
</taxonconcept> |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 15 | 15 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
| 16 | 16 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family, |
| 17 | 17 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 18 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
|
| 19 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 20 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 21 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
|
| 18 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname",
|
|
| 19 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 20 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 21 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname",
|
|
| 22 | 22 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 23 | 23 |
Description,,** No join mapping for *Description ** |
| 24 | 24 |
FamilyID,,** No join mapping for *FamilyID ** |
| inputs/CTFS/TaxonOccurrence/test.xml.ref | ||
|---|---|---|
| 34 | 34 |
<genus>$Genus</genus> |
| 35 | 35 |
<parent_id> |
| 36 | 36 |
<taxonconcept> |
| 37 |
<rank>cultivar</rank> |
|
| 38 | 37 |
<parent_id> |
| 39 | 38 |
<taxonconcept> |
| 40 |
<rank>forma</rank>
|
|
| 39 |
<rank>cultivar</rank>
|
|
| 41 | 40 |
<parent_id> |
| 42 | 41 |
<taxonconcept> |
| 43 |
<rank>variety</rank>
|
|
| 42 |
<rank>forma</rank>
|
|
| 44 | 43 |
<parent_id> |
| 45 | 44 |
<taxonconcept> |
| 46 |
<rank>subspecies</rank> |
|
| 47 |
<taxonname>$SubSpeciesName</taxonname> |
|
| 45 |
<rank>variety</rank> |
|
| 48 | 46 |
<parent_id> |
| 49 | 47 |
<taxonconcept> |
| 50 |
<rank>species</rank> |
|
| 51 |
<taxonname>$SpeciesName</taxonname> |
|
| 48 |
<rank>subspecies</rank>
|
|
| 49 |
<taxonname>$SubSpeciesName</taxonname>
|
|
| 52 | 50 |
<parent_id> |
| 53 | 51 |
<taxonconcept> |
| 54 |
<rank>genus</rank>
|
|
| 55 |
<taxonname>$Genus</taxonname>
|
|
| 52 |
<rank>species</rank>
|
|
| 53 |
<taxonname>$SpeciesName</taxonname>
|
|
| 56 | 54 |
<parent_id> |
| 57 | 55 |
<taxonconcept> |
| 58 |
<rank>family</rank> |
|
| 59 |
<taxonname>$Family</taxonname> |
|
| 56 |
<rank>genus</rank> |
|
| 57 |
<taxonname>$Genus</taxonname> |
|
| 58 |
<parent_id> |
|
| 59 |
<taxonconcept> |
|
| 60 |
<rank>family</rank> |
|
| 61 |
<taxonname>$Family</taxonname> |
|
| 62 |
</taxonconcept> |
|
| 63 |
</parent_id> |
|
| 60 | 64 |
</taxonconcept> |
| 61 | 65 |
</parent_id> |
| 62 | 66 |
</taxonconcept> |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
| 18 | 18 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_taxonconcept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
| 19 | 19 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus, |
| 20 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
|
| 21 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
|
| 20 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname",
|
|
| 21 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname",
|
|
| 22 | 22 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 23 | 23 |
County,/location/locationplace/*_id/placepath/county, |
| 24 | 24 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| inputs/FIA/Organism/test.xml.ref | ||
|---|---|---|
| 81 | 81 |
<genus>$Genus</genus> |
| 82 | 82 |
<parent_id> |
| 83 | 83 |
<taxonconcept> |
| 84 |
<rank>cultivar</rank> |
|
| 85 | 84 |
<parent_id> |
| 86 | 85 |
<taxonconcept> |
| 87 |
<rank>forma</rank>
|
|
| 86 |
<rank>cultivar</rank>
|
|
| 88 | 87 |
<parent_id> |
| 89 | 88 |
<taxonconcept> |
| 90 |
<rank>variety</rank>
|
|
| 89 |
<rank>forma</rank>
|
|
| 91 | 90 |
<parent_id> |
| 92 | 91 |
<taxonconcept> |
| 93 |
<rank>subspecies</rank>
|
|
| 92 |
<rank>variety</rank>
|
|
| 94 | 93 |
<parent_id> |
| 95 | 94 |
<taxonconcept> |
| 96 |
<rank>species</rank> |
|
| 97 |
<taxonname>$SpecificEpithet</taxonname> |
|
| 95 |
<rank>subspecies</rank> |
|
| 98 | 96 |
<parent_id> |
| 99 | 97 |
<taxonconcept> |
| 100 |
<rank>genus</rank> |
|
| 101 |
<taxonname>$Genus</taxonname> |
|
| 98 |
<rank>species</rank> |
|
| 99 |
<taxonname>$SpecificEpithet</taxonname> |
|
| 100 |
<parent_id> |
|
| 101 |
<taxonconcept> |
|
| 102 |
<rank>genus</rank> |
|
| 103 |
<taxonname>$Genus</taxonname> |
|
| 104 |
</taxonconcept> |
|
| 105 |
</parent_id> |
|
| 102 | 106 |
</taxonconcept> |
| 103 | 107 |
</parent_id> |
| 104 | 108 |
</taxonconcept> |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 156 | 156 |
<genus>$Genus</genus> |
| 157 | 157 |
<parent_id> |
| 158 | 158 |
<taxonconcept> |
| 159 |
<rank>cultivar</rank> |
|
| 160 | 159 |
<parent_id> |
| 161 | 160 |
<taxonconcept> |
| 162 |
<rank>forma</rank>
|
|
| 161 |
<rank>cultivar</rank>
|
|
| 163 | 162 |
<parent_id> |
| 164 | 163 |
<taxonconcept> |
| 165 |
<rank>variety</rank>
|
|
| 164 |
<rank>forma</rank>
|
|
| 166 | 165 |
<parent_id> |
| 167 | 166 |
<taxonconcept> |
| 168 |
<rank>subspecies</rank>
|
|
| 167 |
<rank>variety</rank>
|
|
| 169 | 168 |
<parent_id> |
| 170 | 169 |
<taxonconcept> |
| 171 |
<rank>species</rank> |
|
| 172 |
<taxonname>$Species</taxonname> |
|
| 170 |
<rank>subspecies</rank> |
|
| 173 | 171 |
<parent_id> |
| 174 | 172 |
<taxonconcept> |
| 175 |
<rank>genus</rank>
|
|
| 176 |
<taxonname>$Genus</taxonname>
|
|
| 173 |
<rank>species</rank>
|
|
| 174 |
<taxonname>$Species</taxonname>
|
|
| 177 | 175 |
<parent_id> |
| 178 | 176 |
<taxonconcept> |
| 179 |
<rank>family</rank> |
|
| 180 |
<taxonname>$Family</taxonname> |
|
| 177 |
<rank>genus</rank> |
|
| 178 |
<taxonname>$Genus</taxonname> |
|
| 179 |
<parent_id> |
|
| 180 |
<taxonconcept> |
|
| 181 |
<rank>family</rank> |
|
| 182 |
<taxonname>$Family</taxonname> |
|
| 183 |
</taxonconcept> |
|
| 184 |
</parent_id> |
|
| 181 | 185 |
</taxonconcept> |
| 182 | 186 |
</parent_id> |
| 183 | 187 |
</taxonconcept> |
| ... | ... | |
| 190 | 194 |
</parent_id> |
| 191 | 195 |
</taxonconcept> |
| 192 | 196 |
</parent_id> |
| 197 |
<rank>$infra_rank_1</rank> |
|
| 198 |
<taxonname>$infra_ep_1</taxonname> |
|
| 199 |
<verbatimrank>$infra_rank_1</verbatimrank> |
|
| 193 | 200 |
</taxonconcept> |
| 194 | 201 |
</parent_id> |
| 195 | 202 |
<rank>$infra_rank_1</rank> |
| 196 | 203 |
<species>$Species</species> |
| 197 |
<taxonname>$infra_ep_1</taxonname> |
|
| 198 | 204 |
<verbatimrank>$infra_rank_1</verbatimrank> |
| 199 | 205 |
</taxonconcept> |
| 200 | 206 |
</taxonconcept_id> |
| ... | ... | |
| 225 | 231 |
<genus>$OrigGenus</genus> |
| 226 | 232 |
<parent_id> |
| 227 | 233 |
<taxonconcept> |
| 228 |
<rank>cultivar</rank> |
|
| 229 | 234 |
<parent_id> |
| 230 | 235 |
<taxonconcept> |
| 231 |
<rank>forma</rank>
|
|
| 236 |
<rank>cultivar</rank>
|
|
| 232 | 237 |
<parent_id> |
| 233 | 238 |
<taxonconcept> |
| 234 |
<rank>variety</rank>
|
|
| 239 |
<rank>forma</rank>
|
|
| 235 | 240 |
<parent_id> |
| 236 | 241 |
<taxonconcept> |
| 237 |
<rank>subspecies</rank>
|
|
| 242 |
<rank>variety</rank>
|
|
| 238 | 243 |
<parent_id> |
| 239 | 244 |
<taxonconcept> |
| 240 |
<rank>species</rank> |
|
| 241 |
<taxonname>$OrigSpecies</taxonname> |
|
| 245 |
<rank>subspecies</rank> |
|
| 242 | 246 |
<parent_id> |
| 243 | 247 |
<taxonconcept> |
| 244 |
<rank>genus</rank>
|
|
| 245 |
<taxonname>$OrigGenus</taxonname>
|
|
| 248 |
<rank>species</rank>
|
|
| 249 |
<taxonname>$OrigSpecies</taxonname>
|
|
| 246 | 250 |
<parent_id> |
| 247 | 251 |
<taxonconcept> |
| 248 |
<rank>family</rank> |
|
| 249 |
<taxonname>$OrigFamily</taxonname> |
|
| 252 |
<rank>genus</rank> |
|
| 253 |
<taxonname>$OrigGenus</taxonname> |
|
| 254 |
<parent_id> |
|
| 255 |
<taxonconcept> |
|
| 256 |
<rank>family</rank> |
|
| 257 |
<taxonname>$OrigFamily</taxonname> |
|
| 258 |
</taxonconcept> |
|
| 259 |
</parent_id> |
|
| 250 | 260 |
</taxonconcept> |
| 251 | 261 |
</parent_id> |
| 252 | 262 |
</taxonconcept> |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 55 | 55 |
</identifyingtaxonomicname> |
| 56 | 56 |
<parent_id> |
| 57 | 57 |
<taxonconcept> |
| 58 |
<rank>cultivar</rank> |
|
| 59 | 58 |
<parent_id> |
| 60 | 59 |
<taxonconcept> |
| 61 |
<rank>forma</rank>
|
|
| 60 |
<rank>cultivar</rank>
|
|
| 62 | 61 |
<parent_id> |
| 63 | 62 |
<taxonconcept> |
| 64 |
<rank>variety</rank>
|
|
| 63 |
<rank>forma</rank>
|
|
| 65 | 64 |
<parent_id> |
| 66 | 65 |
<taxonconcept> |
| 67 |
<rank>subspecies</rank>
|
|
| 66 |
<rank>variety</rank>
|
|
| 68 | 67 |
<parent_id> |
| 69 | 68 |
<taxonconcept> |
| 70 |
<rank>species</rank> |
|
| 69 |
<rank>subspecies</rank>
|
|
| 71 | 70 |
<parent_id> |
| 72 | 71 |
<taxonconcept> |
| 73 |
<rank>genus</rank>
|
|
| 72 |
<rank>species</rank>
|
|
| 74 | 73 |
<parent_id> |
| 75 | 74 |
<taxonconcept> |
| 76 |
<rank>family</rank> |
|
| 77 |
<taxonname>$Accepted_name_family</taxonname> |
|
| 75 |
<rank>genus</rank> |
|
| 76 |
<parent_id> |
|
| 77 |
<taxonconcept> |
|
| 78 |
<rank>family</rank> |
|
| 79 |
<taxonname>$Accepted_name_family</taxonname> |
|
| 80 |
</taxonconcept> |
|
| 81 |
</parent_id> |
|
| 78 | 82 |
</taxonconcept> |
| 79 | 83 |
</parent_id> |
| 80 | 84 |
</taxonconcept> |
| ... | ... | |
| 87 | 91 |
</parent_id> |
| 88 | 92 |
</taxonconcept> |
| 89 | 93 |
</parent_id> |
| 94 |
<rank>$Accepted_name_rank</rank> |
|
| 95 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
|
| 90 | 96 |
</taxonconcept> |
| 91 | 97 |
</parent_id> |
| 92 | 98 |
<rank>$Accepted_name_rank</rank> |
| ... | ... | |
| 100 | 106 |
<genus>$Genus_matched</genus> |
| 101 | 107 |
<parent_id> |
| 102 | 108 |
<taxonconcept> |
| 103 |
<rank>cultivar</rank> |
|
| 104 | 109 |
<parent_id> |
| 105 | 110 |
<taxonconcept> |
| 106 |
<rank>forma</rank>
|
|
| 111 |
<rank>cultivar</rank>
|
|
| 107 | 112 |
<parent_id> |
| 108 | 113 |
<taxonconcept> |
| 109 |
<rank>variety</rank>
|
|
| 114 |
<rank>forma</rank>
|
|
| 110 | 115 |
<parent_id> |
| 111 | 116 |
<taxonconcept> |
| 112 |
<rank>subspecies</rank>
|
|
| 117 |
<rank>variety</rank>
|
|
| 113 | 118 |
<parent_id> |
| 114 | 119 |
<taxonconcept> |
| 115 |
<rank>species</rank> |
|
| 116 |
<taxonname>$Specific_epithet_matched</taxonname> |
|
| 120 |
<rank>subspecies</rank> |
|
| 117 | 121 |
<parent_id> |
| 118 | 122 |
<taxonconcept> |
| 119 |
<rank>genus</rank>
|
|
| 120 |
<taxonname>$Genus_matched</taxonname>
|
|
| 123 |
<rank>species</rank>
|
|
| 124 |
<taxonname>$Specific_epithet_matched</taxonname>
|
|
| 121 | 125 |
<parent_id> |
| 122 | 126 |
<taxonconcept> |
| 123 |
<rank>family</rank> |
|
| 124 |
<taxonname>$Name_matched_accepted_family</taxonname> |
|
| 127 |
<rank>genus</rank> |
|
| 128 |
<taxonname>$Genus_matched</taxonname> |
|
| 129 |
<parent_id> |
|
| 130 |
<taxonconcept> |
|
| 131 |
<rank>family</rank> |
|
| 132 |
<taxonname>$Name_matched_accepted_family</taxonname> |
|
| 133 |
</taxonconcept> |
|
| 134 |
</parent_id> |
|
| 125 | 135 |
</taxonconcept> |
| 126 | 136 |
</parent_id> |
| 127 | 137 |
</taxonconcept> |
| ... | ... | |
| 134 | 144 |
</parent_id> |
| 135 | 145 |
</taxonconcept> |
| 136 | 146 |
</parent_id> |
| 147 |
<rank>$Name_matched_rank</rank> |
|
| 148 |
<taxonname>$Infraspecific_epithet_matched</taxonname> |
|
| 149 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
|
| 137 | 150 |
</taxonconcept> |
| 138 | 151 |
</parent_id> |
| 139 | 152 |
<rank>$Name_matched_rank</rank> |
| ... | ... | |
| 145 | 158 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
| 146 | 159 |
<parent_id> |
| 147 | 160 |
<taxonconcept> |
| 148 |
<rank>cultivar</rank> |
|
| 149 | 161 |
<parent_id> |
| 150 | 162 |
<taxonconcept> |
| 151 |
<rank>forma</rank>
|
|
| 163 |
<rank>cultivar</rank>
|
|
| 152 | 164 |
<parent_id> |
| 153 | 165 |
<taxonconcept> |
| 154 |
<rank>variety</rank>
|
|
| 166 |
<rank>forma</rank>
|
|
| 155 | 167 |
<parent_id> |
| 156 | 168 |
<taxonconcept> |
| 157 |
<rank>subspecies</rank>
|
|
| 169 |
<rank>variety</rank>
|
|
| 158 | 170 |
<parent_id> |
| 159 | 171 |
<taxonconcept> |
| 160 |
<rank>species</rank> |
|
| 161 |
<taxonname>$Specific_epithet_matched</taxonname> |
|
| 172 |
<rank>subspecies</rank> |
|
| 162 | 173 |
<parent_id> |
| 163 | 174 |
<taxonconcept> |
| 164 |
<rank>genus</rank>
|
|
| 165 |
<taxonname>$Genus_matched</taxonname>
|
|
| 175 |
<rank>species</rank>
|
|
| 176 |
<taxonname>$Specific_epithet_matched</taxonname>
|
|
| 166 | 177 |
<parent_id> |
| 167 | 178 |
<taxonconcept> |
| 168 |
<rank>family</rank> |
|
| 169 |
<taxonname>$Family_matched</taxonname> |
|
| 179 |
<rank>genus</rank> |
|
| 180 |
<taxonname>$Genus_matched</taxonname> |
|
| 181 |
<parent_id> |
|
| 182 |
<taxonconcept> |
|
| 183 |
<rank>family</rank> |
|
| 184 |
<taxonname>$Family_matched</taxonname> |
|
| 185 |
</taxonconcept> |
|
| 186 |
</parent_id> |
|
| 170 | 187 |
</taxonconcept> |
| 171 | 188 |
</parent_id> |
| 172 | 189 |
</taxonconcept> |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: taxonconcept: Moved infraspecific taxonconcept to its own level, rather than combining it with the level that contains the full taxonomic name and author (as well as any morphospecies), for consistency with the storage of other ranked taxonomic name components, which each get their own taxonconcept. The infraspecific taxon concept is general to all parties making idenfitications (within a datasource), while the concatenated name and author and any morphospecies are specific to the person who defined the taxonconcept used by a taxondetermination.