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535
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aaronmk
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CREATE TABLE location
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(
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location_id serial NOT NULL,
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sourceid character varying(30),
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reference_id integer,
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parent_id integer,
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reallatitude double precision,
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reallongitude double precision,
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locationaccuracy double precision,
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confidentialitystatus integer NOT NULL,
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confidentialityreason character varying(200),
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latitude double precision,
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longitude double precision,
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-- ...
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accessioncode character varying(255),
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sublocationxposition double precision,
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sublocationyposition double precision,
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namedplace_id integer,
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CONSTRAINT location_pkey PRIMARY KEY (location_id ),
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CONSTRAINT location_namedplace_id FOREIGN KEY (namedplace_id)
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REFERENCES namedplace (namedplace_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT location_parent_id FOREIGN KEY (parent_id)
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REFERENCES location (location_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT location_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT location_keys UNIQUE (reference_id , parent_id , sourceid )
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);
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CREATE TABLE locationevent -- VegBank's observation table.
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(
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locationevent_id serial NOT NULL,
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previous_id integer,
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location_id integer NOT NULL,
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project_id integer,
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sourceid character varying(30),
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-- ...
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accessioncode character varying(255),
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CONSTRAINT locationevent_pkey PRIMARY KEY (locationevent_id ),
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CONSTRAINT locationevent_location_id FOREIGN KEY (location_id)
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REFERENCES location (location_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT locationevent_project_id FOREIGN KEY (project_id)
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REFERENCES project (project_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT locationevent_keys UNIQUE (location_id , project_id , sourceid )
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);
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CREATE TABLE taxonoccurrence -- VegBank's taxonobservation table.
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(
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taxonoccurrence_id serial NOT NULL,
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locationevent_id integer NOT NULL,
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authorplantname character varying(255),
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reference_id integer,
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taxoninferencearea double precision,
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emb_taxonoccurrence integer,
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int_origplantconcept_id integer,
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int_origplantscifull character varying(255),
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int_origplantscinamenoauth character varying(255),
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int_origplantcommon character varying(255),
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int_origplantcode character varying(255),
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int_currplantconcept_id integer,
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int_currplantscifull character varying(255),
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int_currplantscinamenoauth character varying(255),
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int_currplantcommon character varying(255),
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int_currplantcode character varying(255),
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accessioncode character varying(255),
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CONSTRAINT taxonoccurrence_pkey PRIMARY KEY (taxonoccurrence_id ),
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CONSTRAINT taxonoccurrence_locationevent_id FOREIGN KEY (locationevent_id)
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REFERENCES locationevent (locationevent_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT taxonoccurrence_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE
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);
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CREATE TABLE aggregateoccurrence -- VegBank's taxonimportance table.
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(
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aggregateoccurrence_id serial NOT NULL,
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taxonoccurrence_id integer NOT NULL,
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taxonbin_id integer,
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cover double precision,
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basalarea double precision,
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biomass double precision,
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inferencearea double precision,
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stratumbase double precision,
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stratumheight double precision,
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emb_aggregateoccurrence integer,
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covercode character varying(10),
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count integer NOT NULL,
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accessioncode character varying(255),
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CONSTRAINT aggregateoccurrence_pkey PRIMARY KEY (aggregateoccurrence_id ),
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CONSTRAINT aggregateoccurrence_taxonbin_id FOREIGN KEY (taxonbin_id)
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REFERENCES taxonbin (taxonbin_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT aggregateoccurrence_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
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REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT aggregateoccurrence_keys UNIQUE (taxonoccurrence_id , taxonbin_id )
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);
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CREATE TABLE individualplant -- VegBank's stemcount table.
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(
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individualplant_id serial NOT NULL,
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aggregateoccurrence_id integer NOT NULL,
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height double precision,
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heightaccuracy double precision,
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emb_individualplant integer,
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sourceid character varying(20),
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accessioncode character varying(255),
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stemcount integer,
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CONSTRAINT individualplant_pkey PRIMARY KEY (individualplant_id ),
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CONSTRAINT individualplant_aggregateoccurrence_id FOREIGN KEY (aggregateoccurrence_id)
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REFERENCES aggregateoccurrence (aggregateoccurrence_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT individualplant_keys UNIQUE (aggregateoccurrence_id , sourceid )
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);
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CREATE TABLE stem -- VegBank's stemlocation table.
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(
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stem_id serial NOT NULL,
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individualplant_id integer NOT NULL,
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sourceid character varying(20),
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xposition double precision,
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yposition double precision,
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health character varying(50),
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emb_stem integer,
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diameter double precision,
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height double precision,
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heightaccuracy double precision,
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age double precision,
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accessioncode character varying(255),
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CONSTRAINT stem_pkey PRIMARY KEY (stem_id ),
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CONSTRAINT stem_individualplant_id FOREIGN KEY (individualplant_id)
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REFERENCES individualplant (individualplant_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT stem_keys UNIQUE (individualplant_id , sourceid )
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);
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CREATE TABLE taxondetermination -- VegBank's taxoninterpretation table.
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(
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taxondetermination_id serial NOT NULL,
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taxonoccurrence_id integer NOT NULL,
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plantconcept_id integer NOT NULL,
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party_id integer NOT NULL,
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role_id integer NOT NULL,
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determinationtype character varying(30),
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reference_id integer,
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originaldetermination boolean NOT NULL,
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currentdetermination boolean NOT NULL,
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taxonfit character varying(50),
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taxonconfidence character varying(50),
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grouptype character varying(20),
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notes text,
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notespublic boolean,
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notesmgt boolean,
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revisions boolean,
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determinationdate timestamp with time zone NOT NULL,
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emb_taxondetermination integer,
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accessioncode character varying(255),
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CONSTRAINT taxondetermination_pkey PRIMARY KEY (taxondetermination_id ),
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CONSTRAINT taxondetermination_party_id FOREIGN KEY (party_id)
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REFERENCES party (party_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT taxondetermination_plantconcept_id FOREIGN KEY (plantconcept_id)
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REFERENCES plantconcept (plantconcept_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT taxondetermination_reference_id FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT taxondetermination_role_id FOREIGN KEY (role_id)
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REFERENCES aux_role (role_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT taxondetermination_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
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REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE
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);
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CREATE TABLE specimen -- A herbarium specimen. Contains Darwin Core specimen data.
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(
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specimen_id serial NOT NULL,
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individualplant_id integer,
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reference_id integer NOT NULL,
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collectioncode_dwc character varying(255),
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catalognumber_dwc character varying(255),
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collectiondate timestamp with time zone,
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collector_id integer,
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museum_id integer,
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sourceaccessionnumber character varying(100),
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accessioncode character varying(255),
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taxonoccurrence_id integer,
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CONSTRAINT specimen_pkey PRIMARY KEY (specimen_id ),
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CONSTRAINT specimen_collector_id FOREIGN KEY (collector_id)
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REFERENCES party (party_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT specimen_individualplant_id_fkey FOREIGN KEY (individualplant_id)
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REFERENCES individualplant (individualplant_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT specimen_museum_id FOREIGN KEY (museum_id)
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REFERENCES party (party_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT specimen_reference_id_fkey FOREIGN KEY (reference_id)
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REFERENCES reference (reference_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT specimen_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
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REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE,
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CONSTRAINT specimen_keys UNIQUE (reference_id , collectioncode_dwc , catalognumber_dwc )
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);
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CREATE TABLE taxonbin -- Defines a set of aggregate measurements. Used by aggregateoccurrence to define how measurements were aggregated.
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(
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taxonbin_id integer NOT NULL,
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label character varying(255) NOT NULL,
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stratum_id integer,
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sizeclass_id integer,
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coverindex_id integer,
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accessioncode character varying(255),
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CONSTRAINT taxonbin_pkey PRIMARY KEY (taxonbin_id ),
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CONSTRAINT taxonbin_sizeclass_id FOREIGN KEY (sizeclass_id)
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REFERENCES sizeclass (sizeclass_id) MATCH SIMPLE
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ON UPDATE CASCADE ON DELETE CASCADE
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);
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CREATE TABLE sizeclass -- A range of size measurements used to aggregate organisms.
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(
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sizeclass_id serial NOT NULL,
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mindiameter double precision,
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diameteraccuracy double precision,
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minheight double precision,
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heightaccuracy double precision,
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maxdiameter double precision,
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maxheight double precision,
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accessioncode character varying(255),
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CONSTRAINT sizeclass_pkey PRIMARY KEY (sizeclass_id )
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);
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