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Revision 5404

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Mapped Overall_score to new matchedTaxonFit_fraction

View differences:

inputs/.TNRS/tnrs/map.csv
1 1 
TNRS,VegCore,Filter,Comments
2 2 
Name_number,OMIT,,
3 3 
Name_submitted,verbatimScientificNameWithAuthorship,,
4 
Overall_score,OMIT,,
4 
Overall_score,matchedTaxonFit_fraction,,Assuming is a fraction based on the range of values
5 5 
Name_matched,verbatimScientificName,,
6 6 
Name_matched,scientificName,,
7 7 
Name_matched_rank,taxonRank,,
inputs/.TNRS/tnrs/VegBIEN.csv
10 10 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
11 11 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
12 12 
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
13 
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_fit_fraction,Assuming is a fraction based on the range of values
13 14 
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/author,
14 15 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/family,
15 16 
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
......
61 62 
Name_matched_url,,** No non-empty join mapping for OMIT **
62 63 
Name_number,,** No non-empty join mapping for OMIT **
63 64 
Name_score,,** No non-empty join mapping for OMIT **
64 
Overall_score,,** No non-empty join mapping for OMIT **
65 65 
Selected,,** No non-empty join mapping for OMIT **
66 66 
Source,,** No non-empty join mapping for OMIT **
67 67 
Specific_epithet_score,,** No non-empty join mapping for OMIT **
inputs/.TNRS/tnrs/test.xml.ref
38 38 
                                        </_join_words>
39 39 
                                    </identifyingtaxonomicname>
40 40 
                                    <_set_canon_taxonconcept>
41 
                                        <canon_concept_fit_fraction>$Overall_score</canon_concept_fit_fraction>
41 42 
                                        <canon_concept_id>
42 43 
                                            <taxonconcept>
43 44 
                                                <author>$Accepted_name_author</author>
inputs/.TNRS/tnrs/new_terms.csv
1 1 
Name_number,OMIT,,
2 2 
Name_submitted,verbatimScientificNameWithAuthorship,,
3 
Overall_score,OMIT,,
3 
Overall_score,matchedTaxonFit_fraction,,Assuming is a fraction based on the range of values
4 4 
Name_matched,verbatimScientificName,,
5 5 
Name_matched,scientificName,,
6 6 
Name_matched_rank,taxonRank,,
inputs/.TNRS/tnrs/unmapped_terms.csv
1 
verbatimInfraspecificEpithet
1 2 
taxonomicStatus

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