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Revision 5405

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Restored *-prefixed output terms for unmapped terms that had initially been mapped to OMIT but could reasonably match to something in the future. Continue mapping Name_number to OMIT because it isn't globally unique (it identifies the name only within one TNRS batch).

View differences:

inputs/.TNRS/tnrs/map.csv
1 1 
TNRS,VegCore,Filter,Comments
2 
Name_number,OMIT,,
2 
Name_number,OMIT,,Identifies name only within one TNRS batch. Omitted because not globally unique.
3 3 
Name_submitted,verbatimScientificNameWithAuthorship,,
4 4 
Overall_score,matchedTaxonFit_fraction,,Assuming is a fraction based on the range of values
5 5 
Name_matched,verbatimScientificName,,
6 6 
Name_matched,scientificName,,
7 7 
Name_matched_rank,taxonRank,,
8 
Name_score,OMIT,,
8 
Name_score,*Name_score,,
9 9 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
10 
Name_matched_url,OMIT,,
10 
Name_matched_url,*Name_matched_url,,
11 11 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
12 
Author_score,OMIT,,
12 
Author_score,*Author_score,,
13 13 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
14 
Family_score,OMIT,,
14 
Family_score,*Family_score,,
15 15 
Name_matched_accepted_family,family,,Contains family based on matched name
16 16 
Genus_matched,verbatimGenus,,
17 17 
Genus_matched,genus,,
18 
Genus_score,OMIT,,
18 
Genus_score,*Genus_score,,
19 19 
Specific_epithet_matched,verbatimSpecificEpithet,,
20 20 
Specific_epithet_matched,specificEpithet,,
21 
Specific_epithet_score,OMIT,,
21 
Specific_epithet_score,*Specific_epithet_score,,
22 22 
Infraspecific_rank,verbatimTaxonRank,,
23 23 
Infraspecific_epithet_matched,verbatimInfraspecificEpithet,,
24 24 
Infraspecific_epithet_matched,infraspecificEpithet,,
25 
Infraspecific_epithet_score,OMIT,,
25 
Infraspecific_epithet_score,*Infraspecific_epithet_score,,
26 26 
Infraspecific_rank_2,UNUSED,,
27 27 
Infraspecific_epithet_2_matched,UNUSED,,
28 28 
Infraspecific_epithet_2_score,UNUSED,,
29 
Annotations,OMIT,,
29 
Annotations,*Annotations,,
30 30 
Unmatched_terms,morphospecies,,
31 31 
Taxonomic_status,taxonomicStatus,,
32 32 
Accepted_name,acceptedScientificName,,
33 33 
Accepted_name_author,acceptedScientificNameAuthorship,,
34 34 
Accepted_name_rank,acceptedTaxonRank,,
35 
Accepted_name_url,OMIT,,
36 
Accepted_name_species,OMIT,,Also contains genus. Omitted because Accepted_name contains more info.
35 
Accepted_name_url,*Accepted_name_url,,
36 
Accepted_name_species,*Accepted_name_species,,Also contains genus. Omitted because Accepted_name contains more info.
37 37 
Accepted_name_family,acceptedFamily,,
38 
Selected,OMIT,,
39 
Source,OMIT,,
40 
Warnings,OMIT,,
41 
Accepted_name_lsid,OMIT,,
38 
Selected,*Selected,,
39 
Source,*Source,,
40 
Warnings,*Warnings,,
41 
Accepted_name_lsid,*Accepted_name_lsid,,
inputs/.TNRS/tnrs/VegBIEN.csv
47 47 
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname/_if[@name=""if has verbatim name""]/else",
48 48 
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
49 49 
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank,
50 
Accepted_name_lsid,,** No non-empty join mapping for OMIT **
51 
Accepted_name_species,,** No non-empty join mapping for OMIT ** Also contains genus. Omitted because Accepted_name contains more info.
52 
Accepted_name_url,,** No non-empty join mapping for OMIT **
53 
Annotations,,** No non-empty join mapping for OMIT **
54 
Author_score,,** No non-empty join mapping for OMIT **
55 
Family_score,,** No non-empty join mapping for OMIT **
56 
Genus_score,,** No non-empty join mapping for OMIT **
50 
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid **
51 
Accepted_name_species,,** No join mapping for *Accepted_name_species ** Also contains genus. Omitted because Accepted_name contains more info.
52 
Accepted_name_url,,** No join mapping for *Accepted_name_url **
53 
Annotations,,** No join mapping for *Annotations **
54 
Author_score,,** No join mapping for *Author_score **
55 
Family_score,,** No join mapping for *Family_score **
56 
Genus_score,,** No join mapping for *Genus_score **
57 57 
Infraspecific_epithet_2_matched,,** No non-empty join mapping for UNUSED **
58 58 
Infraspecific_epithet_2_score,,** No non-empty join mapping for UNUSED **
59 59 
Infraspecific_epithet_matched,,** No join mapping for verbatimInfraspecificEpithet **
60 
Infraspecific_epithet_score,,** No non-empty join mapping for OMIT **
60 
Infraspecific_epithet_score,,** No join mapping for *Infraspecific_epithet_score **
61 61 
Infraspecific_rank_2,,** No non-empty join mapping for UNUSED **
62 
Name_matched_url,,** No non-empty join mapping for OMIT **
63 
Name_number,,** No non-empty join mapping for OMIT **
64 
Name_score,,** No non-empty join mapping for OMIT **
65 
Selected,,** No non-empty join mapping for OMIT **
66 
Source,,** No non-empty join mapping for OMIT **
67 
Specific_epithet_score,,** No non-empty join mapping for OMIT **
62 
Name_matched_url,,** No join mapping for *Name_matched_url **
63 
Name_number,,** No non-empty join mapping for OMIT ** Identifies name only within one TNRS batch. Omitted because not globally unique.
64 
Name_score,,** No join mapping for *Name_score **
65 
Selected,,** No join mapping for *Selected **
66 
Source,,** No join mapping for *Source **
67 
Specific_epithet_score,,** No join mapping for *Specific_epithet_score **
68 68 
Taxonomic_status,,** No join mapping for taxonomicStatus **
69 
Warnings,,** No non-empty join mapping for OMIT **
69 
Warnings,,** No join mapping for *Warnings **
inputs/.TNRS/tnrs/new_terms.csv
1 
Name_number,OMIT,,
1 
Name_number,OMIT,,Identifies name only within one TNRS batch. Omitted because not globally unique.
2 2 
Name_submitted,verbatimScientificNameWithAuthorship,,
3 3 
Overall_score,matchedTaxonFit_fraction,,Assuming is a fraction based on the range of values
4 4 
Name_matched,verbatimScientificName,,
5 5 
Name_matched,scientificName,,
6 6 
Name_matched_rank,taxonRank,,
7 
Name_score,OMIT,,
8 7 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
9 
Name_matched_url,OMIT,,
10 8 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
11 
Author_score,OMIT,,
12 9 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
13 
Family_score,OMIT,,
14 10 
Name_matched_accepted_family,family,,Contains family based on matched name
15 11 
Genus_matched,verbatimGenus,,
16 12 
Genus_matched,genus,,
17 
Genus_score,OMIT,,
18 13 
Specific_epithet_matched,verbatimSpecificEpithet,,
19 14 
Specific_epithet_matched,specificEpithet,,
20 
Specific_epithet_score,OMIT,,
21 15 
Infraspecific_rank,verbatimTaxonRank,,
22 16 
Infraspecific_epithet_matched,verbatimInfraspecificEpithet,,
23 17 
Infraspecific_epithet_matched,infraspecificEpithet,,
24 
Infraspecific_epithet_score,OMIT,,
25 18 
Infraspecific_rank_2,UNUSED,,
26 19 
Infraspecific_epithet_2_matched,UNUSED,,
27 20 
Infraspecific_epithet_2_score,UNUSED,,
28 
Annotations,OMIT,,
29 21 
Unmatched_terms,morphospecies,,
30 22 
Accepted_name,acceptedScientificName,,
31 23 
Accepted_name_author,acceptedScientificNameAuthorship,,
32 24 
Accepted_name_rank,acceptedTaxonRank,,
33 
Accepted_name_url,OMIT,,
34 
Accepted_name_species,OMIT,,Also contains genus. Omitted because Accepted_name contains more info.
35 25 
Accepted_name_family,acceptedFamily,,
36 
Selected,OMIT,,
37 
Source,OMIT,,
38 
Warnings,OMIT,,
39 
Accepted_name_lsid,OMIT,,
inputs/.TNRS/tnrs/unmapped_terms.csv
1 
*Name_score
2 
*Name_matched_url
3 
*Author_score
4 
*Family_score
5 
*Genus_score
6 
*Specific_epithet_score
1 7 
verbatimInfraspecificEpithet
8 
*Infraspecific_epithet_score
9 
*Annotations
2 10 
taxonomicStatus
11 
*Accepted_name_url
12 
*Accepted_name_species
13 
*Selected
14 
*Source
15 
*Warnings
16 
*Accepted_name_lsid

Also available in: Unified diff