Revision 5406
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 11 | 11 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
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| 12 | 12 |
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
|
| 13 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_fit_fraction,Assuming is a fraction based on the range of values |
|
| 14 | 13 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/author, |
| 15 | 14 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/family, |
| 16 | 15 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
| ... | ... | |
| 35 | 34 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 36 | 35 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 37 | 36 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/author,Contains author in original string |
| 37 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction,Assuming is a fraction based on the range of values |
|
| 38 | 38 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/family,Contains family in original string (uncommon) |
| 39 | 39 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/genus, |
| 40 | 40 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/identifyingtaxonomicname, |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 38 | 38 |
</_join_words> |
| 39 | 39 |
</identifyingtaxonomicname> |
| 40 | 40 |
<_set_canon_taxonconcept> |
| 41 |
<canon_concept_fit_fraction>$Overall_score</canon_concept_fit_fraction> |
|
| 42 | 41 |
<canon_concept_id> |
| 43 | 42 |
<taxonconcept> |
| 44 | 43 |
<author>$Accepted_name_author</author> |
| ... | ... | |
| 154 | 153 |
<species>$Specific_epithet_matched</species> |
| 155 | 154 |
<taxonconcept fkey="canon_concept_id"> |
| 156 | 155 |
<author>$Author_matched</author> |
| 156 |
<canon_concept_fit_fraction>$Overall_score</canon_concept_fit_fraction> |
|
| 157 | 157 |
<family>$Family_matched</family> |
| 158 | 158 |
<genus>$Genus_matched</genus> |
| 159 | 159 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 145 | 145 |
forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2",
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| 146 | 146 |
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2",
|
| 147 | 147 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
| 148 |
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_fit_fraction, |
|
| 149 | 148 |
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/author, |
| 150 | 149 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/family, |
| 151 | 150 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_canon_taxonconcept/canon_concept_id/taxonconcept/genus, |
| ... | ... | |
| 203 | 202 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 204 | 203 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 205 | 204 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/author, |
| 205 |
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction, |
|
| 206 | 206 |
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/family, |
| 207 | 207 |
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/genus, |
| 208 | 208 |
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/identifyingtaxonomicname, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 145 | 145 |
forma,"//*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept}/identifyingtaxonomicname",
|
| 146 | 146 |
cultivar,"//*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept}/identifyingtaxonomicname",
|
| 147 | 147 |
scientificNameAuthorship,"//*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/canon_concept_id/taxonconcept}/identifyingtaxonomicname",
|
| 148 |
matchedTaxonFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept, |
|
| 149 | 148 |
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/author, |
| 150 | 149 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/family, |
| 151 | 150 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/genus, |
| ... | ... | |
| 203 | 202 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/rank, |
| 204 | 203 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/species, |
| 205 | 204 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/author, |
| 205 |
matchedTaxonFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/canon_concept_fit_fraction, |
|
| 206 | 206 |
verbatimFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/family, |
| 207 | 207 |
verbatimGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/genus, |
| 208 | 208 |
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Remapped matchedTaxonFit_fraction to the verbatim* taxonconcept, because this is actually for the verbatim* concept's fit to the matched concept, not the matched concept's fit to the accepted concept