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Revision 5411

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Mapped Family_score to new matchedFamilyFit_fraction

View differences:

inputs/.TNRS/tnrs/map.csv
11 11 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
12 12 
Author_score,*Author_score,,
13 13 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
14 
Family_score,*Family_score,,
14 
Family_score,matchedFamilyFit_fraction,,
15 15 
Name_matched_accepted_family,family,,Contains family based on matched name
16 16 
Genus_matched,verbatimGenus,,
17 17 
Genus_matched,genus,,
inputs/.TNRS/tnrs/VegBIEN.csv
35 35 
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
36 36 
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/author,Contains author in original string
37 37 
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/1,Assuming is a fraction based on the range of values
38 
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/2,
38 39 
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/family,Contains family in original string (uncommon)
39 40 
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/genus,
40 41 
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/identifyingtaxonomicname,
......
52 53 
Accepted_name_url,,** No join mapping for *Accepted_name_url **
53 54 
Annotations,,** No join mapping for *Annotations **
54 55 
Author_score,,** No join mapping for *Author_score **
55 
Family_score,,** No join mapping for *Family_score **
56 56 
Genus_score,,** No join mapping for *Genus_score **
57 57 
Infraspecific_epithet_2_matched,,** No non-empty join mapping for UNUSED **
58 58 
Infraspecific_epithet_2_score,,** No non-empty join mapping for UNUSED **
inputs/.TNRS/tnrs/test.xml.ref
153 153 
                                    <species>$Specific_epithet_matched</species>
154 154 
                                    <taxonconcept fkey="canon_concept_id">
155 155 
                                        <author>$Author_matched</author>
156 
                                        <canon_concept_fit_fraction>$Overall_score</canon_concept_fit_fraction>
156 
                                        <canon_concept_fit_fraction>
157 
                                            <_max>
158 
                                                <1>$Overall_score</1>
159 
                                                <2>$Family_score</2>
160 
                                            </_max>
161 
                                        </canon_concept_fit_fraction>
157 162 
                                        <family>$Family_matched</family>
158 163 
                                        <genus>$Genus_matched</genus>
159 164 
                                        <identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname>
inputs/.TNRS/tnrs/new_terms.csv
7 7 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
8 8 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
9 9 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
10 
Family_score,matchedFamilyFit_fraction,,
10 11 
Name_matched_accepted_family,family,,Contains family based on matched name
11 12 
Genus_matched,verbatimGenus,,
12 13 
Genus_matched,genus,,
inputs/.TNRS/tnrs/unmapped_terms.csv
1 1 
*Name_score
2 2 
*Name_matched_url
3 3 
*Author_score
4 
*Family_score
5 4 
*Genus_score
6 5 
*Specific_epithet_score
7 6 
verbatimInfraspecificEpithet

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