#!/bin/sh

# Test-scrubs the test taxonomic names

selfDir="$(dirname -- "$0")"

selfDirName="$(basename -- "$selfDir")"

cd "$selfDir/../.."

make inputs/.TNRS/reinstall # asks user for confirmation

make schemas/public/reinstall # asks user for confirmation

make inputs/"$selfDirName"/import log=

for (( i = 0; i < 2; i++ )); do # the 2nd time parses the accepted names

    make inputs/.TNRS/tnrs/tnrs-remake log=

    yes|make schemas/public/reinstall

    make inputs/.TNRS/cleanup

    make inputs/.TNRS/import log=

    make inputs/"$selfDirName"/import log=

done