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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5413 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonconcept: Renamed cano...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5414 about 12 years Aaron Marcuse-Kubitza Added inputs/test_taxonomic_names/test_scrub
  lib 5409 about 12 years Aaron Marcuse-Kubitza xml_func.py: Simplifying functions: Added _min,...
  mappings 5418 about 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: matchedFamilyFit_fraction...
  schemas 5412 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonconcept: Added taxonc...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.99 KB 4752 over 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: postgres-Linux: Adde...
README.TXT 12.6 KB 5416 about 12 years Aaron Marcuse-Kubitza README.TXT: Removed extra trailing whitespace
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5418 10/10/2012 10:47 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: matchedFamilyFit_fraction: Source the "matched" to Family_matched, which is a closer fit than Name_matched. matchedGenusFit_fraction: Fixed Genus_matched source to use #detailed_download instead of #simple_download.
5417 10/10/2012 10:42 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Added matchedGenusFit_fraction
5416 10/10/2012 10:18 AM Aaron Marcuse-Kubitza

README.TXT: Removed extra trailing whitespace
5415 10/10/2012 10:18 AM Aaron Marcuse-Kubitza

README.TXT: Documentation: To import and scrub just the test taxonomic names: Use new inputs/test_taxonomic_names/test_scrub
5414 10/10/2012 10:17 AM Aaron Marcuse-Kubitza

Added inputs/test_taxonomic_names/test_scrub
5413 10/10/2012 10:01 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonconcept: Renamed canon_taxonconcept_id to canon_concept_id to shorten the name, which is used often
5412 10/10/2012 09:45 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonconcept: Added taxonconcept_canon_concept_min_fit() trigger to remove the canon_concept_id link from insufficient matches. These occur when e.g. a name in another language is approximated to a latin name or when the input name is not a proper taxon but TNRS provides a best-guess match anyway.
5411 10/10/2012 09:42 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/map.csv: Mapped Family_score to new matchedFamilyFit_fraction
5410 10/10/2012 09:39 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Use matchedFamilyFit_fraction as canon_concept_fit_fraction when greater than matchedTaxonFit_fraction, because if there is at least a matched family, there is a valid taxonconcept to attach to
5409 10/10/2012 09:39 AM Aaron Marcuse-Kubitza

xml_func.py: Simplifying functions: Added _min, _max as passthroughs

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