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Revision 5420

Added by Aaron Marcuse-Kubitza over 12 years ago

mappings/VegCore-VegBIEN.csv: Mapped matchedGenusFit_fraction, matchedSpeciesFit_fraction. Reordered canon_concept_fit_fraction _maxs in the order they would be used if _alt were being used instead.

View differences:

inputs/.TNRS/tnrs/VegBIEN.csv
34 34 
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank,
35 35 
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
36 36 
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/author,Contains author in original string
37 
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/1,Assuming is a fraction based on the range of values
38 
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/2,
37 
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/1,
38 
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/4,Assuming is a fraction based on the range of values
39 39 
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/family,Contains family in original string (uncommon)
40 40 
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/genus,
41 41 
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/identifyingtaxonomicname,
inputs/.TNRS/tnrs/test.xml.ref
155 155 
                                        <author>$Author_matched</author>
156 156 
                                        <canon_concept_fit_fraction>
157 157 
                                            <_max>
158 
                                                <1>$Overall_score</1>
159 
                                                <2>$Family_score</2>
158 
                                                <1>$Family_score</1>
159 
                                                <4>$Overall_score</4>
160 160 
                                            </_max>
161 161 
                                        </canon_concept_fit_fraction>
162 162 
                                        <family>$Family_matched</family>
mappings/VegCore-VegBIEN.csv
202 202 
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank,
203 203 
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
204 204 
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/author,
205 
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/1,
206 
matchedFamilyFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/2,
205 
matchedFamilyFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/1,
206 
matchedGenusFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/2,
207 
matchedSpeciesFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/3,
208 
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/canon_concept_fit_fraction/_max/4,
207 209 
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/family,
208 210 
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/genus,
209 211 
verbatimScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=canon_concept_id]/identifyingtaxonomicname,
mappings/for_review/VegCore-VegBIEN.csv
202 202 
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/rank,
203 203 
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/species,
204 204 
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/author,
205 
matchedFamilyFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/canon_concept_fit_fraction,
206 
matchedGenusFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/canon_concept_fit_fraction,
207 
matchedSpeciesFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/canon_concept_fit_fraction,
205 208 
matchedTaxonFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/canon_concept_fit_fraction,
206 
matchedFamilyFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/canon_concept_fit_fraction,
207 209 
verbatimFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/family,
208 210 
verbatimGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/genus,
209 211 
verbatimScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/identifyingtaxonomicname,

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