Revision 5479
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/test_taxonomic_names/Taxon/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
test_taxonomic_names,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 3 | 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
| 4 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
|
| 4 | 5 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
| 5 |
scientificNameID,,** No join mapping for scientificNameID ** |
|
| inputs/test_taxonomic_names/Taxon/test.xml.ref | ||
|---|---|---|
| 20 | 20 |
<identifyingtaxonomicname>$scientificName</identifyingtaxonomicname> |
| 21 | 21 |
</taxonconcept> |
| 22 | 22 |
</matched_concept_id> |
| 23 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
|
| 23 | 24 |
<taxonomicname>$scientificName</taxonomicname> |
| 24 | 25 |
</taxonconcept> |
| 25 | 26 |
</taxonconcept_id> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 200 | 200 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonname, |
| 201 | 201 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/verbatimrank, |
| 202 | 202 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 203 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
|
| 204 |
taxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
|
| 205 |
taxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
|
| 203 | 206 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species, |
| 204 | 207 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/author, |
| 205 | 208 |
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/family, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 200 | 200 |
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/parent_id/taxonconcept/taxonname, |
| 201 | 201 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/parent_id/taxonconcept/verbatimrank, |
| 202 | 202 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/rank, |
| 203 |
scientificNameID,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/sourceaccessioncode, |
|
| 204 |
taxonConceptID,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/sourceaccessioncode, |
|
| 205 |
taxonID,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/sourceaccessioncode, |
|
| 203 | 206 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/species, |
| 204 | 207 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/author, |
| 205 | 208 |
verbatimFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonconcept/taxonconcept/family, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Mapped taxonConceptID, taxonID, scientificNameID to taxonconcept.sourceaccessioncode. Note that taxonconcept stores all of these taxonomic entities, using creator_id+creationdate, taxonname+rank+parent_id, and identifyingtaxonomicname, respectively.