| 1 |
537
|
aaronmk
|
-- Existing tables
|
| 2 |
|
|
|
| 3 |
|
|
CREATE TABLE aux_role
|
| 4 |
|
|
(
|
| 5 |
|
|
role_id int(11) NOT NULL AUTO_INCREMENT,
|
| 6 |
|
|
rolecode character varying(30) NOT NULL,
|
| 7 |
|
|
roledescription character varying(200),
|
| 8 |
|
|
CONSTRAINT aux_role_pkey PRIMARY KEY (role_id )
|
| 9 |
|
|
);
|
| 10 |
|
|
|
| 11 |
|
|
CREATE TABLE reference
|
| 12 |
|
|
(
|
| 13 |
|
|
reference_id int(11) NOT NULL AUTO_INCREMENT,
|
| 14 |
|
|
shortname character varying(250),
|
| 15 |
|
|
fulltext__ text,
|
| 16 |
|
|
referencetype character varying(250)
|
| 17 |
|
|
);
|
| 18 |
|
|
|
| 19 |
|
|
CREATE TABLE party
|
| 20 |
|
|
(
|
| 21 |
|
|
party_id int(11) NOT NULL AUTO_INCREMENT,
|
| 22 |
|
|
salutation character varying(20),
|
| 23 |
|
|
givenname character varying(50),
|
| 24 |
|
|
middlename character varying(50),
|
| 25 |
|
|
surname character varying(50),
|
| 26 |
|
|
organizationname character varying(100)
|
| 27 |
|
|
);
|
| 28 |
|
|
|
| 29 |
|
|
CREATE TABLE plantname
|
| 30 |
|
|
(
|
| 31 |
|
|
plantname_id int(11) NOT NULL AUTO_INCREMENT,
|
| 32 |
|
|
plantname character varying(255) NOT NULL,
|
| 33 |
|
|
reference_id int(11),
|
| 34 |
|
|
dateentered timestamp DEFAULT now(),
|
| 35 |
|
|
CONSTRAINT plantname_pkey PRIMARY KEY (plantname_id ),
|
| 36 |
|
|
CONSTRAINT plantname_reference_id FOREIGN KEY (reference_id)
|
| 37 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 38 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 39 |
|
|
);
|
| 40 |
|
|
|
| 41 |
|
|
CREATE TABLE plantconcept
|
| 42 |
|
|
(
|
| 43 |
|
|
plantconcept_id int(11) NOT NULL AUTO_INCREMENT,
|
| 44 |
|
|
plantname_id int(11) NOT NULL,
|
| 45 |
|
|
reference_id int(11) NOT NULL,
|
| 46 |
|
|
plantname character varying(200),
|
| 47 |
|
|
plantcode character varying(23),
|
| 48 |
|
|
plantdescription text,
|
| 49 |
|
|
d_obscount int(11),
|
| 50 |
|
|
d_currentaccepted int(1),
|
| 51 |
|
|
accessioncode character varying(255),
|
| 52 |
|
|
CONSTRAINT plantconcept_pkey PRIMARY KEY (plantconcept_id ),
|
| 53 |
|
|
CONSTRAINT plantconcept_plantname_id FOREIGN KEY (plantname_id)
|
| 54 |
|
|
REFERENCES plantname (plantname_id) MATCH SIMPLE
|
| 55 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 56 |
|
|
CONSTRAINT plantconcept_reference_id FOREIGN KEY (reference_id)
|
| 57 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 58 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 59 |
|
|
);
|
| 60 |
|
|
|
| 61 |
|
|
CREATE TABLE namedplace
|
| 62 |
|
|
(
|
| 63 |
|
|
namedplace_id int(11) NOT NULL AUTO_INCREMENT,
|
| 64 |
|
|
placesystem character varying(50),
|
| 65 |
|
|
placename character varying(100) NOT NULL,
|
| 66 |
|
|
placedescription text,
|
| 67 |
|
|
placecode character varying(15),
|
| 68 |
|
|
owner character varying(100),
|
| 69 |
|
|
reference_id int(11),
|
| 70 |
|
|
d_obscount int(11),
|
| 71 |
|
|
accessioncode character varying(255),
|
| 72 |
|
|
CONSTRAINT namedplace_pkey PRIMARY KEY (namedplace_id ),
|
| 73 |
|
|
CONSTRAINT namedplace_reference_id FOREIGN KEY (reference_id)
|
| 74 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 75 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 76 |
|
|
CONSTRAINT namedplace_keys UNIQUE (placesystem , placename )
|
| 77 |
|
|
);
|
| 78 |
|
|
|
| 79 |
|
|
CREATE TABLE project
|
| 80 |
|
|
(
|
| 81 |
|
|
project_id int(11) NOT NULL AUTO_INCREMENT,
|
| 82 |
|
|
projectname character varying(150) NOT NULL,
|
| 83 |
|
|
projectdescription text,
|
| 84 |
|
|
startdate timestamp,
|
| 85 |
|
|
stopdate timestamp,
|
| 86 |
|
|
d_obscount int(11),
|
| 87 |
|
|
d_lastlocationaddeddate timestamp,
|
| 88 |
|
|
accessioncode character varying(255),
|
| 89 |
|
|
CONSTRAINT project_pkey PRIMARY KEY (project_id ),
|
| 90 |
|
|
CONSTRAINT project_keys UNIQUE (projectname , startdate , stopdate )
|
| 91 |
|
|
);
|
| 92 |
|
|
|
| 93 |
|
|
-- New tables
|
| 94 |
|
|
|
| 95 |
536
|
aaronmk
|
CREATE TABLE location
|
| 96 |
|
|
(
|
| 97 |
|
|
location_id int(11) NOT NULL AUTO_INCREMENT,
|
| 98 |
|
|
sourceid character varying(30),
|
| 99 |
|
|
reference_id int(11),
|
| 100 |
|
|
parent_id int(11),
|
| 101 |
|
|
reallatitude double precision,
|
| 102 |
|
|
reallongitude double precision,
|
| 103 |
|
|
locationaccuracy double precision,
|
| 104 |
|
|
confidentialitystatus int(11) NOT NULL,
|
| 105 |
|
|
confidentialityreason character varying(200),
|
| 106 |
|
|
latitude double precision,
|
| 107 |
|
|
longitude double precision,
|
| 108 |
|
|
-- ...
|
| 109 |
|
|
accessioncode character varying(255),
|
| 110 |
|
|
sublocationxposition double precision,
|
| 111 |
|
|
sublocationyposition double precision,
|
| 112 |
|
|
namedplace_id int(11),
|
| 113 |
|
|
CONSTRAINT location_pkey PRIMARY KEY (location_id ),
|
| 114 |
|
|
CONSTRAINT location_namedplace_id FOREIGN KEY (namedplace_id)
|
| 115 |
|
|
REFERENCES namedplace (namedplace_id) MATCH SIMPLE
|
| 116 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 117 |
|
|
CONSTRAINT location_parent_id FOREIGN KEY (parent_id)
|
| 118 |
|
|
REFERENCES location (location_id) MATCH SIMPLE
|
| 119 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 120 |
|
|
CONSTRAINT location_reference_id FOREIGN KEY (reference_id)
|
| 121 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 122 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 123 |
|
|
CONSTRAINT location_keys UNIQUE (reference_id , parent_id , sourceid )
|
| 124 |
|
|
);
|
| 125 |
|
|
|
| 126 |
|
|
CREATE TABLE locationevent -- VegBank's observation table.
|
| 127 |
|
|
(
|
| 128 |
|
|
locationevent_id int(11) NOT NULL AUTO_INCREMENT,
|
| 129 |
|
|
previous_id int(11),
|
| 130 |
|
|
location_id int(11) NOT NULL,
|
| 131 |
|
|
project_id int(11),
|
| 132 |
|
|
sourceid character varying(30),
|
| 133 |
|
|
-- ...
|
| 134 |
|
|
accessioncode character varying(255),
|
| 135 |
|
|
CONSTRAINT locationevent_pkey PRIMARY KEY (locationevent_id ),
|
| 136 |
|
|
CONSTRAINT locationevent_location_id FOREIGN KEY (location_id)
|
| 137 |
|
|
REFERENCES location (location_id) MATCH SIMPLE
|
| 138 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 139 |
|
|
CONSTRAINT locationevent_project_id FOREIGN KEY (project_id)
|
| 140 |
|
|
REFERENCES project (project_id) MATCH SIMPLE
|
| 141 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 142 |
|
|
CONSTRAINT locationevent_keys UNIQUE (location_id , project_id , sourceid )
|
| 143 |
|
|
);
|
| 144 |
|
|
|
| 145 |
|
|
CREATE TABLE taxonoccurrence -- VegBank's taxonobservation table.
|
| 146 |
|
|
(
|
| 147 |
|
|
taxonoccurrence_id int(11) NOT NULL AUTO_INCREMENT,
|
| 148 |
|
|
locationevent_id int(11) NOT NULL,
|
| 149 |
|
|
authorplantname character varying(255),
|
| 150 |
|
|
reference_id int(11),
|
| 151 |
|
|
taxoninferencearea double precision,
|
| 152 |
|
|
emb_taxonoccurrence int(11),
|
| 153 |
539
|
aaronmk
|
-- ...
|
| 154 |
536
|
aaronmk
|
accessioncode character varying(255),
|
| 155 |
|
|
CONSTRAINT taxonoccurrence_pkey PRIMARY KEY (taxonoccurrence_id ),
|
| 156 |
|
|
CONSTRAINT taxonoccurrence_locationevent_id FOREIGN KEY (locationevent_id)
|
| 157 |
|
|
REFERENCES locationevent (locationevent_id) MATCH SIMPLE
|
| 158 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 159 |
|
|
CONSTRAINT taxonoccurrence_reference_id FOREIGN KEY (reference_id)
|
| 160 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 161 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 162 |
|
|
);
|
| 163 |
|
|
|
| 164 |
|
|
CREATE TABLE aggregateoccurrence -- VegBank's taxonimportance table.
|
| 165 |
|
|
(
|
| 166 |
|
|
aggregateoccurrence_id int(11) NOT NULL AUTO_INCREMENT,
|
| 167 |
|
|
taxonoccurrence_id int(11) NOT NULL,
|
| 168 |
|
|
taxonbin_id int(11),
|
| 169 |
|
|
cover double precision,
|
| 170 |
|
|
basalarea double precision,
|
| 171 |
|
|
biomass double precision,
|
| 172 |
|
|
inferencearea double precision,
|
| 173 |
|
|
stratumbase double precision,
|
| 174 |
|
|
stratumheight double precision,
|
| 175 |
|
|
emb_aggregateoccurrence int(11),
|
| 176 |
|
|
covercode character varying(10),
|
| 177 |
|
|
count int(11) NOT NULL,
|
| 178 |
|
|
accessioncode character varying(255),
|
| 179 |
|
|
CONSTRAINT aggregateoccurrence_pkey PRIMARY KEY (aggregateoccurrence_id ),
|
| 180 |
|
|
CONSTRAINT aggregateoccurrence_taxonbin_id FOREIGN KEY (taxonbin_id)
|
| 181 |
|
|
REFERENCES taxonbin (taxonbin_id) MATCH SIMPLE
|
| 182 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 183 |
|
|
CONSTRAINT aggregateoccurrence_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 184 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 185 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 186 |
|
|
CONSTRAINT aggregateoccurrence_keys UNIQUE (taxonoccurrence_id , taxonbin_id )
|
| 187 |
|
|
);
|
| 188 |
|
|
|
| 189 |
|
|
CREATE TABLE individualplant -- VegBank's stemcount table.
|
| 190 |
|
|
(
|
| 191 |
|
|
individualplant_id int(11) NOT NULL AUTO_INCREMENT,
|
| 192 |
|
|
aggregateoccurrence_id int(11) NOT NULL,
|
| 193 |
|
|
height double precision,
|
| 194 |
|
|
heightaccuracy double precision,
|
| 195 |
|
|
emb_individualplant int(11),
|
| 196 |
|
|
sourceid character varying(20),
|
| 197 |
|
|
accessioncode character varying(255),
|
| 198 |
|
|
stemcount int(11),
|
| 199 |
|
|
CONSTRAINT individualplant_pkey PRIMARY KEY (individualplant_id ),
|
| 200 |
|
|
CONSTRAINT individualplant_aggregateoccurrence_id FOREIGN KEY (aggregateoccurrence_id)
|
| 201 |
|
|
REFERENCES aggregateoccurrence (aggregateoccurrence_id) MATCH SIMPLE
|
| 202 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 203 |
|
|
CONSTRAINT individualplant_keys UNIQUE (aggregateoccurrence_id , sourceid )
|
| 204 |
|
|
);
|
| 205 |
|
|
|
| 206 |
|
|
CREATE TABLE stem -- VegBank's stemlocation table.
|
| 207 |
|
|
(
|
| 208 |
|
|
stem_id int(11) NOT NULL AUTO_INCREMENT,
|
| 209 |
|
|
individualplant_id int(11) NOT NULL,
|
| 210 |
|
|
sourceid character varying(20),
|
| 211 |
|
|
xposition double precision,
|
| 212 |
|
|
yposition double precision,
|
| 213 |
|
|
health character varying(50),
|
| 214 |
|
|
emb_stem int(11),
|
| 215 |
|
|
diameter double precision,
|
| 216 |
|
|
height double precision,
|
| 217 |
|
|
heightaccuracy double precision,
|
| 218 |
|
|
age double precision,
|
| 219 |
|
|
accessioncode character varying(255),
|
| 220 |
|
|
CONSTRAINT stem_pkey PRIMARY KEY (stem_id ),
|
| 221 |
|
|
CONSTRAINT stem_individualplant_id FOREIGN KEY (individualplant_id)
|
| 222 |
|
|
REFERENCES individualplant (individualplant_id) MATCH SIMPLE
|
| 223 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 224 |
|
|
CONSTRAINT stem_keys UNIQUE (individualplant_id , sourceid )
|
| 225 |
|
|
);
|
| 226 |
|
|
|
| 227 |
537
|
aaronmk
|
CREATE TABLE specimen -- A herbarium specimen. Contains Darwin Core specimen data.
|
| 228 |
|
|
(
|
| 229 |
|
|
specimen_id int(11) NOT NULL AUTO_INCREMENT,
|
| 230 |
|
|
reference_id int(11) NOT NULL,
|
| 231 |
|
|
collectioncode_dwc character varying(255),
|
| 232 |
|
|
catalognumber_dwc character varying(255),
|
| 233 |
|
|
collectiondate timestamp,
|
| 234 |
|
|
collector_id int(11),
|
| 235 |
|
|
museum_id int(11),
|
| 236 |
|
|
sourceaccessionnumber character varying(100),
|
| 237 |
|
|
accessioncode character varying(255),
|
| 238 |
|
|
taxonoccurrence_id int(11),
|
| 239 |
|
|
CONSTRAINT specimen_pkey PRIMARY KEY (specimen_id ),
|
| 240 |
|
|
CONSTRAINT specimen_collector_id FOREIGN KEY (collector_id)
|
| 241 |
|
|
REFERENCES party (party_id) MATCH SIMPLE
|
| 242 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 243 |
|
|
CONSTRAINT specimen_museum_id FOREIGN KEY (museum_id)
|
| 244 |
|
|
REFERENCES party (party_id) MATCH SIMPLE
|
| 245 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 246 |
|
|
CONSTRAINT specimen_reference_id_fkey FOREIGN KEY (reference_id)
|
| 247 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 248 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 249 |
|
|
CONSTRAINT specimen_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 250 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 251 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 252 |
|
|
CONSTRAINT specimen_keys UNIQUE (reference_id , collectioncode_dwc , catalognumber_dwc )
|
| 253 |
|
|
);
|
| 254 |
|
|
|
| 255 |
544
|
aaronmk
|
CREATE TABLE voucher
|
| 256 |
|
|
(
|
| 257 |
|
|
voucher_id int(11) NOT NULL AUTO_INCREMENT,
|
| 258 |
545
|
aaronmk
|
taxonoccurrence_id int(11) NOT NULL,
|
| 259 |
|
|
specimen_id int(11) NOT NULL,
|
| 260 |
544
|
aaronmk
|
accessioncode character varying(255),
|
| 261 |
|
|
CONSTRAINT voucher_pkey PRIMARY KEY (voucher_id ),
|
| 262 |
|
|
CONSTRAINT voucher_specimen_id FOREIGN KEY (specimen_id)
|
| 263 |
|
|
REFERENCES specimen (specimen_id) MATCH SIMPLE
|
| 264 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 265 |
|
|
CONSTRAINT voucher_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 266 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 267 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 268 |
|
|
CONSTRAINT voucher_keys UNIQUE (taxonoccurrence_id , specimen_id )
|
| 269 |
|
|
);
|
| 270 |
|
|
|
| 271 |
536
|
aaronmk
|
CREATE TABLE taxondetermination -- VegBank's taxoninterpretation table.
|
| 272 |
|
|
(
|
| 273 |
|
|
taxondetermination_id int(11) NOT NULL AUTO_INCREMENT,
|
| 274 |
|
|
taxonoccurrence_id int(11) NOT NULL,
|
| 275 |
|
|
plantconcept_id int(11) NOT NULL,
|
| 276 |
|
|
party_id int(11) NOT NULL,
|
| 277 |
|
|
role_id int(11) NOT NULL,
|
| 278 |
|
|
determinationtype character varying(30),
|
| 279 |
|
|
reference_id int(11),
|
| 280 |
|
|
originaldetermination int(1) NOT NULL,
|
| 281 |
|
|
currentdetermination int(1) NOT NULL,
|
| 282 |
|
|
taxonfit character varying(50),
|
| 283 |
|
|
taxonconfidence character varying(50),
|
| 284 |
|
|
grouptype character varying(20),
|
| 285 |
|
|
notes text,
|
| 286 |
|
|
notespublic int(1),
|
| 287 |
|
|
notesmgt int(1),
|
| 288 |
|
|
revisions int(1),
|
| 289 |
537
|
aaronmk
|
determinationdate timestamp NOT NULL,
|
| 290 |
536
|
aaronmk
|
emb_taxondetermination int(11),
|
| 291 |
|
|
accessioncode character varying(255),
|
| 292 |
|
|
CONSTRAINT taxondetermination_pkey PRIMARY KEY (taxondetermination_id ),
|
| 293 |
|
|
CONSTRAINT taxondetermination_party_id FOREIGN KEY (party_id)
|
| 294 |
|
|
REFERENCES party (party_id) MATCH SIMPLE
|
| 295 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 296 |
|
|
CONSTRAINT taxondetermination_plantconcept_id FOREIGN KEY (plantconcept_id)
|
| 297 |
|
|
REFERENCES plantconcept (plantconcept_id) MATCH SIMPLE
|
| 298 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 299 |
|
|
CONSTRAINT taxondetermination_reference_id FOREIGN KEY (reference_id)
|
| 300 |
|
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
| 301 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 302 |
|
|
CONSTRAINT taxondetermination_role_id FOREIGN KEY (role_id)
|
| 303 |
|
|
REFERENCES aux_role (role_id) MATCH SIMPLE
|
| 304 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
| 305 |
|
|
CONSTRAINT taxondetermination_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
| 306 |
|
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
| 307 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 308 |
|
|
);
|
| 309 |
|
|
|
| 310 |
537
|
aaronmk
|
CREATE TABLE sizeclass -- A range of size measurements used to aggregate organisms.
|
| 311 |
536
|
aaronmk
|
(
|
| 312 |
537
|
aaronmk
|
sizeclass_id int(11) NOT NULL AUTO_INCREMENT,
|
| 313 |
|
|
mindiameter double precision,
|
| 314 |
|
|
diameteraccuracy double precision,
|
| 315 |
|
|
minheight double precision,
|
| 316 |
|
|
heightaccuracy double precision,
|
| 317 |
|
|
maxdiameter double precision,
|
| 318 |
|
|
maxheight double precision,
|
| 319 |
536
|
aaronmk
|
accessioncode character varying(255),
|
| 320 |
537
|
aaronmk
|
CONSTRAINT sizeclass_pkey PRIMARY KEY (sizeclass_id )
|
| 321 |
536
|
aaronmk
|
);
|
| 322 |
|
|
|
| 323 |
|
|
CREATE TABLE taxonbin -- Defines a set of aggregate measurements. Used by aggregateoccurrence to define how measurements were aggregated.
|
| 324 |
|
|
(
|
| 325 |
|
|
taxonbin_id int(11) NOT NULL,
|
| 326 |
|
|
label character varying(255) NOT NULL,
|
| 327 |
|
|
stratum_id int(11),
|
| 328 |
|
|
sizeclass_id int(11),
|
| 329 |
|
|
coverindex_id int(11),
|
| 330 |
|
|
accessioncode character varying(255),
|
| 331 |
|
|
CONSTRAINT taxonbin_pkey PRIMARY KEY (taxonbin_id ),
|
| 332 |
|
|
CONSTRAINT taxonbin_sizeclass_id FOREIGN KEY (sizeclass_id)
|
| 333 |
|
|
REFERENCES sizeclass (sizeclass_id) MATCH SIMPLE
|
| 334 |
|
|
ON UPDATE CASCADE ON DELETE CASCADE
|
| 335 |
|
|
);
|
