Project

General

Profile

Statistics
| Revision:
Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5467 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonconcept: Renamed cano...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5491 about 12 years Aaron Marcuse-Kubitza Added inputs/.NCBI/. This uses many of the new ...
  lib 5498 about 12 years Aaron Marcuse-Kubitza sql_gen.py: null_sentinels: Added entry for date
  mappings 5495 about 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Re-sourced TaxonomicRankE...
  schemas 5499 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Changed `timestamp with ti...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.86 KB 5459 over 12 years Aaron Marcuse-Kubitza Makefile: Moved setting of $(root) before inclu...
README.TXT 12.8 KB 5496 about 12 years Aaron Marcuse-Kubitza README.TXT: Documentation: To import and scrub ...
map 989 Bytes 5158 over 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5499 10/15/2012 07:50 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Changed `timestamp with time zone` fields to `date` because time information is not stored in these fields, and it's confusing to have an arbitrary timezone (the server's timezone) and an arbitrary time (midnight) set for input data that only has a precision to the nearest day

5498 10/15/2012 07:43 AM Aaron Marcuse-Kubitza

sql_gen.py: null_sentinels: Added entry for date

5497 10/15/2012 07:40 AM Aaron Marcuse-Kubitza

lib/PostgreSQL-MySQL.csv: custom types: Also exclude date, datetime

5496 10/15/2012 07:11 AM Aaron Marcuse-Kubitza

README.TXT: Documentation: To import and scrub just the test taxonomic names: Run `make backups/TNRS.backup/restore` in the background because it takes awhile

5495 10/15/2012 06:45 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Re-sourced TaxonomicRankEnum fields to the official TCS schema rather than the TCS version in VegX

5494 10/15/2012 06:42 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonrank: Updated source to the TCS schema (rather than VegBank) for the new, expanded list. Note that although the list itself was compiled from the TCS version in VegX, the official TCS download does not differ from the VegX TCS in the TaxonomicRankEnum fields (the xs: namespace has just been replaced with xsd: by VegX).

5493 10/12/2012 05:21 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_db_view: taxonconcept: Join again on the accepted_concept_id in order to use the accepted taxonconcept rather than the verbatim taxonconcept from the datasource

5492 10/12/2012 05:14 PM Aaron Marcuse-Kubitza

schemas/: svn:ignore log files

5491 10/12/2012 05:11 PM Aaron Marcuse-Kubitza

Added inputs/.NCBI/. This uses many of the new schema and mappings features, such as taxonconcept.sourceaccessioncode and parentTaxonID

5490 10/12/2012 05:07 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: identifyingtaxonomicname: Don't create if taxonconcept has an explicit parent, because the taxonName (which is generally only a component of the full taxonomic name, e.g. specificEpithet) is not globally unique. Datasources that provide name components in such a way that levels at or below family can't be directly concatenated cannot currently receive an identifyingtaxonomicname for input to TNRS.

View all revisions | View revisions

Also available in: Atom