Revision 5502
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 16 | 16 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| 17 | 17 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 18 | 18 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2, |
| 19 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonname", |
|
| 19 | 20 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
| 20 | 21 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/rank, |
| 21 | 22 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/verbatimrank, |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 76 | 76 |
<parent_id> |
| 77 | 77 |
<taxonconcept> |
| 78 | 78 |
<rank>family</rank> |
| 79 |
<matched_concept_id> |
|
| 80 |
<taxonconcept> |
|
| 81 |
<creator_id> |
|
| 82 |
<party> |
|
| 83 |
<creator_id>0</creator_id> |
|
| 84 |
<organizationname>NCBI</organizationname> |
|
| 85 |
</party> |
|
| 86 |
</creator_id> |
|
| 87 |
<rank>family</rank> |
|
| 88 |
<taxonname>$Accepted_name_family</taxonname> |
|
| 89 |
</taxonconcept> |
|
| 90 |
</matched_concept_id> |
|
| 79 | 91 |
<taxonname>$Accepted_name_family</taxonname> |
| 80 | 92 |
</taxonconcept> |
| 81 | 93 |
</parent_id> |
| ... | ... | |
| 180 | 192 |
</path> |
| 181 | 193 |
</_simplifyPath> |
| 182 | 194 |
</VegBIEN> |
| 183 |
Inserted 10 new rows into database |
|
| 195 |
Inserted 12 new rows into database |
|
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 171 | 171 |
acceptedSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonname", |
| 172 | 172 |
acceptedSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonname", |
| 173 | 173 |
acceptedGenus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonname", |
| 174 |
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonname", |
|
| 174 | 175 |
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonname", |
| 175 | 176 |
acceptedOrder,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonname", |
| 176 | 177 |
acceptedClass,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_set_matched_taxonconcept/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 171 | 171 |
acceptedSubspecies,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=subspecies]/taxonname, |
| 172 | 172 |
acceptedSpecificEpithet,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=species]/taxonname, |
| 173 | 173 |
acceptedGenus,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=genus]/taxonname, |
| 174 |
acceptedFamily,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=family]/matched_concept_id/taxonconcept/taxonname, |
|
| 174 | 175 |
acceptedFamily,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=family]/taxonname, |
| 175 | 176 |
acceptedOrder,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=order]/taxonname, |
| 176 | 177 |
acceptedClass,//*_id/taxonconcept/taxonconcept/parent_id/taxonconcept/parent_id[rank=class]/taxonname, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Also map acceptedFamily to the corresponding NCBI family