Revision 5513
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegBIEN.csv | ||
|---|---|---|
| 2 | 2 |
parent tax_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/cond/_exists", |
| 3 | 3 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
| 4 | 4 |
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6",
|
| 5 |
parent tax_id,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_parent_id/parent_id/taxonconcept/sourceaccessioncode, |
|
| 5 | 6 |
parent tax_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/cond/_exists", |
| 6 | 7 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/rank", |
| 7 | 8 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/verbatimrank", |
| 8 |
parent tax_id,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/sourceaccessioncode, |
|
| 9 | 9 |
rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 10 | 10 |
tax_id,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
| 11 | 11 |
name_txt,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonname, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: taxonconcept.parent_id when explicit parent provided: Set taxonconcept.parent_id using new _taxonconcept_set_parent_id() after creating the child taxonconcept, so that the parent_id will point to the already-inserted parent taxonconcept instead of creating a new, empty parent taxonconcept. This creates a two-step import, where first the taxonconcepts are imported, and then the parent_ids are matched up. This is necessary for column-based import because all the parent taxonconcepts are imported in a separate iteration from the child taxonconcepts with only their sourceaccessioncode, so this iteration must occur after the child taxonconcept iteration in order to match up with fully-populated taxonconcepts. Row-based import, on the other hand, does not require _taxonconcept_set_parent_id() but does require the taxonconcepts to be provided in dependency order (parents first), which is unfortunately not the case for NCBI.