Revision 5513
Added by Aaron Marcuse-Kubitza over 12 years ago
| VegCore-VegBIEN.csv | ||
|---|---|---|
| 184 | 184 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/species, |
| 185 | 185 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/taxonomicname, |
| 186 | 186 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/verbatimrank, |
| 187 |
parentScientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_parent_id/parent_id/taxonconcept/sourceaccessioncode, |
|
| 188 |
parentTaxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_parent_id/parent_id/taxonconcept/sourceaccessioncode, |
|
| 189 |
parentTaxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_parent_id/parent_id/taxonconcept/sourceaccessioncode, |
|
| 187 | 190 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author, |
| 188 | 191 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/givenname/_namePart/first, |
| 189 | 192 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/middlename/_namePart/middle, |
| ... | ... | |
| 206 | 209 |
class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonname", |
| 207 | 210 |
phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonname", |
| 208 | 211 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonname", |
| 209 |
parentScientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/sourceaccessioncode, |
|
| 210 |
parentTaxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/sourceaccessioncode, |
|
| 211 |
parentTaxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/sourceaccessioncode, |
|
| 212 | 212 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonname, |
| 213 | 213 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank, |
| 214 | 214 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: taxonconcept.parent_id when explicit parent provided: Set taxonconcept.parent_id using new _taxonconcept_set_parent_id() after creating the child taxonconcept, so that the parent_id will point to the already-inserted parent taxonconcept instead of creating a new, empty parent taxonconcept. This creates a two-step import, where first the taxonconcepts are imported, and then the parent_ids are matched up. This is necessary for column-based import because all the parent taxonconcepts are imported in a separate iteration from the child taxonconcepts with only their sourceaccessioncode, so this iteration must occur after the child taxonconcept iteration in order to match up with fully-populated taxonconcepts. Row-based import, on the other hand, does not require _taxonconcept_set_parent_id() but does require the taxonconcepts to be provided in dependency order (parents first), which is unfortunately not the case for NCBI.