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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5523 over 12 years Aaron Marcuse-Kubitza sql.select() calls: Removed order_by=None every...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5543 over 12 years Aaron Marcuse-Kubitza inputs/Madidi/Organism/map.csv: Total height: R...
  lib 5544 over 12 years Aaron Marcuse-Kubitza lib/PostgreSQL-MySQL.csv: Also filter out const...
  mappings 5540 over 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Mapped height_m
  schemas 5546 over 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonconcept_ancestor: Add...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.86 KB 5459 over 12 years Aaron Marcuse-Kubitza Makefile: Moved setting of $(root) before inclu...
README.TXT 12.9 KB 5519 over 12 years Aaron Marcuse-Kubitza README.TXT: Data import: On local machine: Adde...
map 989 Bytes 5158 over 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5546 10/16/2012 06:32 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonconcept_ancestor: Added taxonconcept_ancestor_descendants index to support looking up all the descendants for a taxonconcept. This will be used by the new taxonconcept_update_ancestors() trigger, which will support inserting taxonconcepts out of dependency order (such as for NCBI).

5545 10/16/2012 04:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: *_update_ancestors(): Made trigger deferred, so that it would run after all rows have been inserted in a bulk insert, such as during column-based import. This ensures that ancestors lists are not populated until all parents are inserted, which may occur out of order for datasources (such as NCBI) whose nodes are not in dependency order. (A node that newly acquires a parent will have to update all its descendants, which will then be updated again when its parent acquires its own parent.)

5544 10/16/2012 04:28 PM Aaron Marcuse-Kubitza

lib/PostgreSQL-MySQL.csv: Also filter out constraint triggers in addition to regular triggers

5543 10/15/2012 05:37 PM Aaron Marcuse-Kubitza

inputs/Madidi/Organism/map.csv: Total height: Remapped to height_m, assuming units based on the range and precision of values

5542 10/15/2012 05:33 PM Aaron Marcuse-Kubitza

inputs/VegBank/stemcount/map.csv: stemheight: Remapped to height_m using units from <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>

5541 10/15/2012 05:29 PM Aaron Marcuse-Kubitza

inputs/SALVIAS/plotObservations/map.csv, inputs/SALVIAS-CSV/Organism/map.csv: height_m, stem_height_m: Remapped to height_m using units from <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>

5540 10/15/2012 05:24 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Mapped height_m

5539 10/15/2012 05:15 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Added height_m

5538 10/15/2012 04:20 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv, VegCore-VegBIEN.csv: Removed no longer used and unit-ambiguous organismX, organismY. Use organismX_m, organismY_m instead.

5537 10/15/2012 04:18 PM Aaron Marcuse-Kubitza

inputs/VegBank/stemlocation/map.csv: stemxposition, stemyposition: Remapped to organismX_m/organismY_m using units from <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>

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