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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5590 over 12 years Aaron Marcuse-Kubitza sql_io.py: append_csv(): Take a reader and head...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5562 over 12 years Aaron Marcuse-Kubitza inputs/FIA/Organism/map.csv: Height: Remapped t...
  lib 5590 over 12 years Aaron Marcuse-Kubitza sql_io.py: append_csv(): Take a reader and head...
  mappings 5567 over 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Removed unit-ambiguous he...
  schemas 5559 over 12 years Aaron Marcuse-Kubitza schemas/functions.sql: Added _ft_to_m()
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.86 KB 5459 over 12 years Aaron Marcuse-Kubitza Makefile: Moved setting of $(root) before inclu...
README.TXT 12.9 KB 5563 over 12 years Aaron Marcuse-Kubitza README.TXT: Data import: import_all: Added NCBI...
map 989 Bytes 5158 over 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5590 10/17/2012 11:00 AM Aaron Marcuse-Kubitza

sql_io.py: append_csv(): Take a reader and header rather than a stream_info and stream to allow callers to use the simpler csvs.reader_and_header() function. This also allows callers to pass in a wrapped CSV reader for filtering, etc.
5589 10/17/2012 10:44 AM Aaron Marcuse-Kubitza

csv2db, tnrs_db: Removed ProgressInputStream wrapper around input stream, which is no longer needed (and causes overlapping output) now that sql_io.append_csv() prints # rows read
5588 10/17/2012 10:42 AM Aaron Marcuse-Kubitza

sql_io.py: append_csv(): Wrap input stream in a ProgressInputStream that reports rows (rather than lines) read
5587 10/17/2012 10:40 AM Aaron Marcuse-Kubitza

csvs.py: InputRewriter: Use new StreamFilter to translate StopIteration EOF to ''
5586 10/17/2012 10:36 AM Aaron Marcuse-Kubitza

csvs.py: Added StreamFilter
5585 10/17/2012 10:36 AM Aaron Marcuse-Kubitza

csvs.py: InputRewriter: Also support stream inputs which report EOF as '' instead of StopIteration
5584 10/17/2012 09:55 AM Aaron Marcuse-Kubitza

sql_io.py: append_csv(): Removed no longer used INSERT mode, since all callers now use the default COPY FROM
5583 10/17/2012 09:53 AM Aaron Marcuse-Kubitza

sql_io.py: import_csv(): Removed no longer needed manual setting of use_copy_from, which defaults to True in append_csv()
5582 10/17/2012 09:50 AM Aaron Marcuse-Kubitza

csv2db: Removed no longer needed manual setting of use_copy_from, which defaults to True in sql_io.import_csv()
5581 10/17/2012 09:49 AM Aaron Marcuse-Kubitza

csv2db: Removed no longer needed separate handling of sql.DatabaseErrors, because all recoverable errors caused by COPY FROM (EncodingException and ragged rows) are now handled or avoided

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