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Revision 5597

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Mapped Name_matched_url to scientificNameID, since the URL uniquely identifies the matched taxonconcept

View differences:

inputs/.TNRS/tnrs/map.csv
7 7 
Name_matched_rank,taxonRank,,
8 8 
Name_score,*Name_score,,
9 9 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
10 
Name_matched_url,*Name_matched_url,,
10 
Name_matched_url,scientificNameID,,
11 11 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
12 12 
Author_score,*Author_score,,
13 13 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
inputs/.TNRS/tnrs/VegBIEN.csv
33 33 
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",Contains family based on matched name
34 34 
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonepithet,
35 35 
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank,
36 
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode,
36 37 
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
37 38 
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/author,Contains author in original string
38 39 
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/family,Contains family in original string (uncommon)
......
61 62 
Infraspecific_epithet_matched,,** No join mapping for verbatimInfraspecificEpithet **
62 63 
Infraspecific_epithet_score,,** No join mapping for *Infraspecific_epithet_score **
63 64 
Infraspecific_rank_2,,** No non-empty join mapping for UNUSED **
64 
Name_matched_url,,** No join mapping for *Name_matched_url **
65 65 
Name_number,,** No non-empty join mapping for OMIT ** Identifies name only within one TNRS batch. Omitted because not globally unique.
66 66 
Name_score,,** No join mapping for *Name_score **
67 67 
Selected,,** No join mapping for *Selected **
inputs/.TNRS/tnrs/test.xml.ref
162 162 
                                        </taxonconcept>
163 163 
                                    </parent_id>
164 164 
                                    <rank>$Name_matched_rank</rank>
165 
                                    <sourceaccessioncode>$Name_matched_url</sourceaccessioncode>
165 166 
                                    <species>$Specific_epithet_matched</species>
166 167 
                                    <taxonconcept fkey="matched_concept_id">
167 168 
                                        <author>$Author_matched</author>
inputs/.TNRS/tnrs/new_terms.csv
5 5 
Name_matched,scientificName,,
6 6 
Name_matched_rank,taxonRank,,
7 7 
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name
8 
Name_matched_url,scientificNameID,,
8 9 
Author_matched,verbatimScientificNameAuthorship,,Contains author in original string
9 10 
Family_matched,verbatimFamily,,Contains family in original string (uncommon)
10 11 
Family_score,matchedFamilyFit_fraction,,
inputs/.TNRS/tnrs/unmapped_terms.csv
1 1 
*Name_score
2 
*Name_matched_url
3 2 
*Author_score
4 3 
verbatimInfraspecificEpithet
5 4 
*Infraspecific_epithet_score

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