Project

General

Profile

1
#!/usr/bin/env python
2
# Maps one datasource to another, using a map spreadsheet if needed
3
# For outputting an XML file to a PostgreSQL database, use the general format of
4
# http://vegbank.org/vegdocs/xml/vegbank_example_ver1.0.2.xml
5

    
6
import os
7
import os.path
8
import sys
9
import xml.dom.minidom
10

    
11
sys.path.append(os.path.dirname(__file__)+"/lib")
12

    
13
def env_flag(name): return name in os.environ and os.environ[name] != ''
14

    
15
def main():
16
    # Get db config from env vars
17
    db_config_names = ['host', 'user', 'password', 'database']
18
    env_names = []
19
    def get_db_config(prefix):
20
        has_all = True
21
        db_config = {}
22
        for name in db_config_names:
23
            env_name = prefix+'_'+name
24
            env_names.append(env_name)
25
            if env_name in os.environ: db_config[name] = os.environ[env_name]
26
            else: has_all = False
27
        if has_all: return db_config
28
        else: return None
29
    from_db_config = get_db_config('from')
30
    to_db_config = get_db_config('to')
31
    uses_map = not (from_db_config == None and to_db_config != None)
32
    
33
    # Parse args
34
    prog_name = sys.argv[0]
35
    try: prog_name, map_path = sys.argv
36
    except ValueError:
37
        if uses_map: raise SystemExit('Usage: env'+''.join(map(lambda name:
38
            ' ['+name+'=...]', env_names))+' [commit=1] '+prog_name
39
            +' [map_path] [<input] [>output]')
40
    commit = env_flag('commit')
41
    
42
    csv_config = dict(delimiter=',', quotechar='"')
43
    
44
    # Load map
45
    is_xml = True
46
    if uses_map:
47
        import copy
48
        import csv
49
        
50
        import xpath
51
        
52
        map_ = {}
53
        has_types = False # whether outer elements are type containiners
54
        stream = open(map_path, 'rb')
55
        reader = csv.reader(stream, **csv_config)
56
        src, dest = reader.next()[:2]
57
        src, sep, src_base = src.partition('/')
58
        is_xml = sep != ''
59
        for row in reader:
60
            name, path = row[:2]
61
            if name != '' and path != '':
62
                if path.startswith('/*s/'): has_types = True # *s for type elem
63
                path = path.replace('<name>', name)
64
                map_[name] = xpath.XpathParser(path).parse()
65
        stream.close()
66
    
67
    # Input datasource to XML tree
68
    if is_xml: doc = xml.dom.minidom.parse(sys.stdin)
69
    if uses_map:
70
        import xml_xpath
71
        
72
        out_doc = xml.dom.minidom.getDOMImplementation().createDocument(None,
73
            dest, None)
74
        if is_xml: raise Exception('XML-XML mapping not supported yet')
75
        else: # input is CSV
76
            reader = csv.reader(sys.stdin, **csv_config)
77
            fieldnames = reader.next()
78
            row_idx = 0
79
            for row in reader:
80
                row_id = str(row_idx)
81
                for idx, name in enumerate(fieldnames):
82
                    value = row[idx]
83
                    if value != '' and name in map_:
84
                        path = copy.deepcopy(map_[name]) # don't modify value!
85
                        xpath.set_id(path, row_id, has_types)
86
                        xpath.set_value(path, value)
87
                        xml_xpath.get(out_doc, path, True)
88
                row_idx += 1
89
        doc = out_doc
90
    
91
    # Output XML tree
92
    if to_db_config != None: # output is database
93
        import psycopg2
94
        from psycopg2.extensions import ISOLATION_LEVEL_SERIALIZABLE
95
        
96
        import db_xml
97
        
98
        db = psycopg2.connect(**to_db_config)
99
        db.set_isolation_level(ISOLATION_LEVEL_SERIALIZABLE)
100
        try:
101
            row_ct_ref = [0]
102
            db_xml.xml2db(db, doc.documentElement, row_ct_ref)
103
            print 'Inserted '+str(row_ct_ref[0])+' rows'
104
            if commit: db.commit()
105
        finally:
106
            db.rollback()
107
            db.close()
108
    else: doc.writexml(sys.stdout, addindent='    ', newl='\n') # output is XML
109

    
110
main()
(2-2/3)