Revision 5608
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<locationevent> |
| 8 | 8 |
<taxonoccurrence> |
| 9 | 9 |
<taxondetermination> |
| 10 |
<taxonconcept_id>
|
|
| 11 |
<taxonconcept>
|
|
| 10 |
<taxonlabel_id>
|
|
| 11 |
<taxonlabel>
|
|
| 12 | 12 |
<identifyingtaxonomicname> |
| 13 | 13 |
<_join_words> |
| 14 | 14 |
<1> |
| ... | ... | |
| 37 | 37 |
<2>$Name_matched_author</2> |
| 38 | 38 |
</_join_words> |
| 39 | 39 |
</identifyingtaxonomicname> |
| 40 |
<_taxonconcept_set_matched_concept_id>
|
|
| 41 |
<matched_concept_id>
|
|
| 42 |
<taxonconcept>
|
|
| 40 |
<_taxonlabel_set_matched_label_id>
|
|
| 41 |
<matched_label_id>
|
|
| 42 |
<taxonlabel>
|
|
| 43 | 43 |
<author>$Accepted_name_author</author> |
| 44 | 44 |
<family>$Accepted_name_family</family> |
| 45 | 45 |
<identifyingtaxonomicname> |
| ... | ... | |
| 54 | 54 |
</_join_words> |
| 55 | 55 |
</identifyingtaxonomicname> |
| 56 | 56 |
<parent_id> |
| 57 |
<taxonconcept>
|
|
| 57 |
<taxonlabel>
|
|
| 58 | 58 |
<parent_id> |
| 59 |
<taxonconcept>
|
|
| 59 |
<taxonlabel>
|
|
| 60 | 60 |
<rank>cultivar</rank> |
| 61 | 61 |
<parent_id> |
| 62 |
<taxonconcept>
|
|
| 62 |
<taxonlabel>
|
|
| 63 | 63 |
<rank>forma</rank> |
| 64 | 64 |
<parent_id> |
| 65 |
<taxonconcept>
|
|
| 65 |
<taxonlabel>
|
|
| 66 | 66 |
<rank>variety</rank> |
| 67 | 67 |
<parent_id> |
| 68 |
<taxonconcept>
|
|
| 68 |
<taxonlabel>
|
|
| 69 | 69 |
<rank>subspecies</rank> |
| 70 | 70 |
<parent_id> |
| 71 |
<taxonconcept>
|
|
| 71 |
<taxonlabel>
|
|
| 72 | 72 |
<rank>species</rank> |
| 73 | 73 |
<parent_id> |
| 74 |
<taxonconcept>
|
|
| 74 |
<taxonlabel>
|
|
| 75 | 75 |
<rank>genus</rank> |
| 76 | 76 |
<parent_id> |
| 77 |
<taxonconcept>
|
|
| 77 |
<taxonlabel>
|
|
| 78 | 78 |
<rank>family</rank> |
| 79 |
<matched_concept_id>
|
|
| 80 |
<taxonconcept>
|
|
| 79 |
<matched_label_id>
|
|
| 80 |
<taxonlabel>
|
|
| 81 | 81 |
<creator_id> |
| 82 | 82 |
<party> |
| 83 | 83 |
<creator_id>0</creator_id> |
| ... | ... | |
| 86 | 86 |
</creator_id> |
| 87 | 87 |
<rank>family</rank> |
| 88 | 88 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
| 89 |
</taxonconcept>
|
|
| 90 |
</matched_concept_id>
|
|
| 89 |
</taxonlabel>
|
|
| 90 |
</matched_label_id>
|
|
| 91 | 91 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
| 92 |
</taxonconcept>
|
|
| 92 |
</taxonlabel>
|
|
| 93 | 93 |
</parent_id> |
| 94 |
</taxonconcept>
|
|
| 94 |
</taxonlabel>
|
|
| 95 | 95 |
</parent_id> |
| 96 |
</taxonconcept>
|
|
| 96 |
</taxonlabel>
|
|
| 97 | 97 |
</parent_id> |
| 98 |
</taxonconcept>
|
|
| 98 |
</taxonlabel>
|
|
| 99 | 99 |
</parent_id> |
| 100 |
</taxonconcept>
|
|
| 100 |
</taxonlabel>
|
|
| 101 | 101 |
</parent_id> |
| 102 |
</taxonconcept>
|
|
| 102 |
</taxonlabel>
|
|
| 103 | 103 |
</parent_id> |
| 104 |
</taxonconcept>
|
|
| 104 |
</taxonlabel>
|
|
| 105 | 105 |
</parent_id> |
| 106 | 106 |
<rank>$Accepted_name_rank</rank> |
| 107 | 107 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
| 108 |
</taxonconcept>
|
|
| 108 |
</taxonlabel>
|
|
| 109 | 109 |
</parent_id> |
| 110 | 110 |
<rank>$Accepted_name_rank</rank> |
| 111 | 111 |
<taxonomicname>$Accepted_name</taxonomicname> |
| 112 | 112 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
| 113 |
</taxonconcept>
|
|
| 114 |
</matched_concept_id>
|
|
| 115 |
</_taxonconcept_set_matched_concept_id>
|
|
| 113 |
</taxonlabel>
|
|
| 114 |
</matched_label_id>
|
|
| 115 |
</_taxonlabel_set_matched_label_id>
|
|
| 116 | 116 |
<author>$Name_matched_author</author> |
| 117 | 117 |
<family>$Name_matched_accepted_family</family> |
| 118 | 118 |
<genus>$Genus_matched</genus> |
| 119 | 119 |
<parent_id> |
| 120 |
<taxonconcept>
|
|
| 120 |
<taxonlabel>
|
|
| 121 | 121 |
<rank>$Name_matched_rank</rank> |
| 122 | 122 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
| 123 | 123 |
<parent_id> |
| 124 |
<taxonconcept>
|
|
| 124 |
<taxonlabel>
|
|
| 125 | 125 |
<rank>cultivar</rank> |
| 126 | 126 |
<parent_id> |
| 127 |
<taxonconcept>
|
|
| 127 |
<taxonlabel>
|
|
| 128 | 128 |
<rank>forma</rank> |
| 129 | 129 |
<parent_id> |
| 130 |
<taxonconcept>
|
|
| 130 |
<taxonlabel>
|
|
| 131 | 131 |
<rank>variety</rank> |
| 132 | 132 |
<parent_id> |
| 133 |
<taxonconcept>
|
|
| 133 |
<taxonlabel>
|
|
| 134 | 134 |
<rank>subspecies</rank> |
| 135 | 135 |
<parent_id> |
| 136 |
<taxonconcept>
|
|
| 136 |
<taxonlabel>
|
|
| 137 | 137 |
<rank>species</rank> |
| 138 | 138 |
<taxonepithet>$Specific_epithet_matched</taxonepithet> |
| 139 | 139 |
<parent_id> |
| 140 |
<taxonconcept>
|
|
| 140 |
<taxonlabel>
|
|
| 141 | 141 |
<rank>genus</rank> |
| 142 | 142 |
<taxonepithet>$Genus_matched</taxonepithet> |
| 143 | 143 |
<parent_id> |
| 144 |
<taxonconcept>
|
|
| 144 |
<taxonlabel>
|
|
| 145 | 145 |
<rank>family</rank> |
| 146 | 146 |
<taxonepithet>$Name_matched_accepted_family</taxonepithet> |
| 147 |
</taxonconcept>
|
|
| 147 |
</taxonlabel>
|
|
| 148 | 148 |
</parent_id> |
| 149 |
</taxonconcept>
|
|
| 149 |
</taxonlabel>
|
|
| 150 | 150 |
</parent_id> |
| 151 |
</taxonconcept>
|
|
| 151 |
</taxonlabel>
|
|
| 152 | 152 |
</parent_id> |
| 153 |
</taxonconcept>
|
|
| 153 |
</taxonlabel>
|
|
| 154 | 154 |
</parent_id> |
| 155 |
</taxonconcept>
|
|
| 155 |
</taxonlabel>
|
|
| 156 | 156 |
</parent_id> |
| 157 |
</taxonconcept>
|
|
| 157 |
</taxonlabel>
|
|
| 158 | 158 |
</parent_id> |
| 159 |
</taxonconcept>
|
|
| 159 |
</taxonlabel>
|
|
| 160 | 160 |
</parent_id> |
| 161 | 161 |
<taxonepithet>$Infraspecific_epithet_matched</taxonepithet> |
| 162 |
</taxonconcept>
|
|
| 162 |
</taxonlabel>
|
|
| 163 | 163 |
</parent_id> |
| 164 | 164 |
<rank>$Name_matched_rank</rank> |
| 165 | 165 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
| 166 | 166 |
<species>$Specific_epithet_matched</species> |
| 167 |
<taxonconcept fkey="matched_concept_id">
|
|
| 167 |
<taxonlabel fkey="matched_label_id">
|
|
| 168 | 168 |
<author>$Author_matched</author> |
| 169 | 169 |
<family>$Family_matched</family> |
| 170 | 170 |
<genus>$Genus_matched</genus> |
| 171 | 171 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
| 172 |
<matched_concept_fit_fraction>
|
|
| 172 |
<matched_label_fit_fraction>
|
|
| 173 | 173 |
<_max> |
| 174 | 174 |
<1>$Family_score</1> |
| 175 | 175 |
<2>$Genus_score</2> |
| 176 | 176 |
<3>$Specific_epithet_score</3> |
| 177 | 177 |
<4>$Overall_score</4> |
| 178 | 178 |
</_max> |
| 179 |
</matched_concept_fit_fraction>
|
|
| 179 |
</matched_label_fit_fraction>
|
|
| 180 | 180 |
<species>$Specific_epithet_matched</species> |
| 181 | 181 |
<taxonepithet>$Unmatched_terms</taxonepithet> |
| 182 | 182 |
<taxonomicname>$Name_matched</taxonomicname> |
| 183 | 183 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
| 184 |
</taxonconcept>
|
|
| 184 |
</taxonlabel>
|
|
| 185 | 185 |
<taxonomicname>$Name_matched</taxonomicname> |
| 186 | 186 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
| 187 |
</taxonconcept>
|
|
| 188 |
</taxonconcept_id>
|
|
| 187 |
</taxonlabel>
|
|
| 188 |
</taxonlabel_id>
|
|
| 189 | 189 |
</taxondetermination> |
| 190 | 190 |
</taxonoccurrence> |
| 191 | 191 |
</locationevent> |
| ... | ... | |
| 193 | 193 |
</path> |
| 194 | 194 |
</_simplifyPath> |
| 195 | 195 |
</VegBIEN> |
| 196 |
Inserted 11 new rows into database |
|
| 196 |
Inserted 12 new rows into database |
|
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 30 | 30 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 31 | 31 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 32 | 32 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 33 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/1",Contains the binomial in addition to the authority
|
|
| 34 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 36 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 37 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 38 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 39 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 40 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 41 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 42 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonepithet",
|
|
| 43 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 44 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 45 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 46 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonepithet",
|
|
| 47 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonepithet",
|
|
| 48 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonepithet",
|
|
| 49 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonepithet",
|
|
| 50 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 51 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
|
|
| 52 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicnamewithauthor,Contains the binomial in addition to the authority
|
|
| 33 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/1",Contains the binomial in addition to the authority
|
|
| 34 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 36 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 37 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 38 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 39 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 40 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 41 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 42 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 43 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 44 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 45 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 46 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
|
| 47 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
|
| 48 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
|
| 49 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
|
| 50 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 51 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 52 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicnamewithauthor,Contains the binomial in addition to the authority
|
|
| 53 | 53 |
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
| 54 | 54 |
IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 55 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 56 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 57 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 55 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 56 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 57 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 58 | 58 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 59 | 59 |
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/1", |
| 60 | 60 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/2",Don't overwrite CatalogNumberNumeric |
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 47 | 47 |
</aggregateoccurrence> |
| 48 | 48 |
<taxondetermination> |
| 49 | 49 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
| 50 |
<taxonconcept_id>
|
|
| 51 |
<taxonconcept>
|
|
| 52 |
<matched_concept_id>
|
|
| 53 |
<taxonconcept>
|
|
| 50 |
<taxonlabel_id>
|
|
| 51 |
<taxonlabel>
|
|
| 52 |
<matched_label_id>
|
|
| 53 |
<taxonlabel>
|
|
| 54 | 54 |
<creator_id> |
| 55 | 55 |
<party> |
| 56 | 56 |
<creator_id>0</creator_id> |
| ... | ... | |
| 75 | 75 |
<2>$AuthorOfScientificName</2> |
| 76 | 76 |
</_join_words> |
| 77 | 77 |
</identifyingtaxonomicname> |
| 78 |
</taxonconcept>
|
|
| 79 |
</matched_concept_id>
|
|
| 78 |
</taxonlabel>
|
|
| 79 |
</matched_label_id>
|
|
| 80 | 80 |
<author>$AuthorOfScientificName</author> |
| 81 | 81 |
<creator_id> |
| 82 | 82 |
<_simplifyPath> |
| ... | ... | |
| 87 | 87 |
<family>$Family</family> |
| 88 | 88 |
<genus>$Genus</genus> |
| 89 | 89 |
<parent_id> |
| 90 |
<taxonconcept>
|
|
| 90 |
<taxonlabel>
|
|
| 91 | 91 |
<parent_id> |
| 92 |
<taxonconcept>
|
|
| 92 |
<taxonlabel>
|
|
| 93 | 93 |
<rank>cultivar</rank> |
| 94 | 94 |
<parent_id> |
| 95 |
<taxonconcept>
|
|
| 95 |
<taxonlabel>
|
|
| 96 | 96 |
<rank>forma</rank> |
| 97 | 97 |
<parent_id> |
| 98 |
<taxonconcept>
|
|
| 98 |
<taxonlabel>
|
|
| 99 | 99 |
<rank>variety</rank> |
| 100 | 100 |
<parent_id> |
| 101 |
<taxonconcept>
|
|
| 101 |
<taxonlabel>
|
|
| 102 | 102 |
<rank>subspecies</rank> |
| 103 | 103 |
<parent_id> |
| 104 |
<taxonconcept>
|
|
| 104 |
<taxonlabel>
|
|
| 105 | 105 |
<rank>species</rank> |
| 106 | 106 |
<taxonepithet>$SpecificEpithet</taxonepithet> |
| 107 | 107 |
<parent_id> |
| 108 |
<taxonconcept>
|
|
| 108 |
<taxonlabel>
|
|
| 109 | 109 |
<rank>genus</rank> |
| 110 | 110 |
<taxonepithet>$Genus</taxonepithet> |
| 111 | 111 |
<parent_id> |
| 112 |
<taxonconcept>
|
|
| 112 |
<taxonlabel>
|
|
| 113 | 113 |
<rank>family</rank> |
| 114 | 114 |
<taxonepithet>$Family</taxonepithet> |
| 115 |
</taxonconcept>
|
|
| 115 |
</taxonlabel>
|
|
| 116 | 116 |
</parent_id> |
| 117 |
</taxonconcept>
|
|
| 117 |
</taxonlabel>
|
|
| 118 | 118 |
</parent_id> |
| 119 |
</taxonconcept>
|
|
| 119 |
</taxonlabel>
|
|
| 120 | 120 |
</parent_id> |
| 121 |
</taxonconcept>
|
|
| 121 |
</taxonlabel>
|
|
| 122 | 122 |
</parent_id> |
| 123 |
</taxonconcept>
|
|
| 123 |
</taxonlabel>
|
|
| 124 | 124 |
</parent_id> |
| 125 |
</taxonconcept>
|
|
| 125 |
</taxonlabel>
|
|
| 126 | 126 |
</parent_id> |
| 127 |
</taxonconcept>
|
|
| 127 |
</taxonlabel>
|
|
| 128 | 128 |
</parent_id> |
| 129 | 129 |
<taxonepithet>$InfraspecificEpithet</taxonepithet> |
| 130 |
</taxonconcept>
|
|
| 130 |
</taxonlabel>
|
|
| 131 | 131 |
</parent_id> |
| 132 | 132 |
<species>$SpecificEpithet</species> |
| 133 | 133 |
<taxonomicname>$ScientificName</taxonomicname> |
| 134 |
</taxonconcept>
|
|
| 135 |
</taxonconcept_id>
|
|
| 134 |
</taxonlabel>
|
|
| 135 |
</taxonlabel_id>
|
|
| 136 | 136 |
</taxondetermination> |
| 137 | 137 |
<taxondetermination> |
| 138 | 138 |
<isoriginal>true</isoriginal> |
| 139 |
<taxonconcept_id>
|
|
| 140 |
<taxonconcept>
|
|
| 139 |
<taxonlabel_id>
|
|
| 140 |
<taxonlabel>
|
|
| 141 | 141 |
<family>$GBIFFamilyOriginal</family> |
| 142 | 142 |
<genus>$GBIFGenusOriginal</genus> |
| 143 |
<matched_concept_id>
|
|
| 144 |
<taxonconcept>
|
|
| 143 |
<matched_label_id>
|
|
| 144 |
<taxonlabel>
|
|
| 145 | 145 |
<creator_id> |
| 146 | 146 |
<party> |
| 147 | 147 |
<creator_id>0</creator_id> |
| ... | ... | |
| 159 | 159 |
</2> |
| 160 | 160 |
</_alt> |
| 161 | 161 |
</identifyingtaxonomicname> |
| 162 |
</taxonconcept>
|
|
| 163 |
</matched_concept_id>
|
|
| 162 |
</taxonlabel>
|
|
| 163 |
</matched_label_id>
|
|
| 164 | 164 |
<parent_id> |
| 165 |
<taxonconcept>
|
|
| 165 |
<taxonlabel>
|
|
| 166 | 166 |
<parent_id> |
| 167 |
<taxonconcept>
|
|
| 167 |
<taxonlabel>
|
|
| 168 | 168 |
<rank>cultivar</rank> |
| 169 | 169 |
<parent_id> |
| 170 |
<taxonconcept>
|
|
| 170 |
<taxonlabel>
|
|
| 171 | 171 |
<rank>forma</rank> |
| 172 | 172 |
<parent_id> |
| 173 |
<taxonconcept>
|
|
| 173 |
<taxonlabel>
|
|
| 174 | 174 |
<rank>variety</rank> |
| 175 | 175 |
<parent_id> |
| 176 |
<taxonconcept>
|
|
| 176 |
<taxonlabel>
|
|
| 177 | 177 |
<rank>subspecies</rank> |
| 178 | 178 |
<parent_id> |
| 179 |
<taxonconcept>
|
|
| 179 |
<taxonlabel>
|
|
| 180 | 180 |
<rank>species</rank> |
| 181 | 181 |
<parent_id> |
| 182 |
<taxonconcept>
|
|
| 182 |
<taxonlabel>
|
|
| 183 | 183 |
<rank>genus</rank> |
| 184 | 184 |
<taxonepithet>$GBIFGenusOriginal</taxonepithet> |
| 185 | 185 |
<parent_id> |
| 186 |
<taxonconcept>
|
|
| 186 |
<taxonlabel>
|
|
| 187 | 187 |
<rank>family</rank> |
| 188 | 188 |
<taxonepithet>$GBIFFamilyOriginal</taxonepithet> |
| 189 |
</taxonconcept>
|
|
| 189 |
</taxonlabel>
|
|
| 190 | 190 |
</parent_id> |
| 191 |
</taxonconcept>
|
|
| 191 |
</taxonlabel>
|
|
| 192 | 192 |
</parent_id> |
| 193 |
</taxonconcept>
|
|
| 193 |
</taxonlabel>
|
|
| 194 | 194 |
</parent_id> |
| 195 |
</taxonconcept>
|
|
| 195 |
</taxonlabel>
|
|
| 196 | 196 |
</parent_id> |
| 197 |
</taxonconcept>
|
|
| 197 |
</taxonlabel>
|
|
| 198 | 198 |
</parent_id> |
| 199 |
</taxonconcept>
|
|
| 199 |
</taxonlabel>
|
|
| 200 | 200 |
</parent_id> |
| 201 |
</taxonconcept>
|
|
| 201 |
</taxonlabel>
|
|
| 202 | 202 |
</parent_id> |
| 203 |
</taxonconcept>
|
|
| 203 |
</taxonlabel>
|
|
| 204 | 204 |
</parent_id> |
| 205 | 205 |
<taxonomicname>$ScientificNameOriginal</taxonomicname> |
| 206 |
</taxonconcept>
|
|
| 207 |
</taxonconcept_id>
|
|
| 206 |
</taxonlabel>
|
|
| 207 |
</taxonlabel_id>
|
|
| 208 | 208 |
</taxondetermination> |
| 209 | 209 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
| 210 | 210 |
</taxonoccurrence> |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 21 | 21 |
StemTag,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Tag,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 23 | 23 |
MeasureID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else", |
| 24 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 25 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 26 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 27 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 28 |
SpeciesAuthority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 29 |
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,
|
|
| 30 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 31 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 32 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonepithet",
|
|
| 33 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 34 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 36 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 24 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 25 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 26 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 27 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 28 |
SpeciesAuthority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 29 |
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
|
|
| 30 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 31 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 32 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 33 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 34 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 36 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 37 | 37 |
Description,,** No join mapping for *Description ** |
| 38 | 38 |
ExactDate,,** No join mapping for *ExactDate ** |
| 39 | 39 |
FamilyID,,** No join mapping for *FamilyID ** |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 9 | 9 |
CensusID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 10 | 10 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 11 | 11 |
SpeciesInvID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
| 12 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 13 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 14 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 15 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 16 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 17 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 18 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonepithet",
|
|
| 19 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 20 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 21 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 22 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 12 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 13 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 14 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 15 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 16 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 17 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 18 |
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 19 |
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 20 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 21 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 22 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 23 | 23 |
Description,,** No join mapping for *Description ** |
| 24 | 24 |
FamilyID,,** No join mapping for *FamilyID ** |
| 25 | 25 |
FieldFamily,,** No join mapping for *FieldFamily ** |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 16 | 16 |
TreeTag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
| 17 | 17 |
PlotCD,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 18 | 18 |
TreeTag,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 19 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 20 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 21 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 22 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 23 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 24 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 19 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 20 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 21 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 22 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 23 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 24 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 25 | 25 |
County,/location/locationplace/*_id/placepath/county, |
| 26 | 26 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 27 | 27 |
HOM,,** No join mapping for *HOM ** |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 57 | 57 |
tag1,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2/_alt/2","The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
| 58 | 58 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""HemiepÃfito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 59 | 59 |
PlotObsID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 60 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 61 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 62 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 63 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 64 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 65 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 66 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName.
|
|
| 67 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,Brad: This is the author of the scientificName.
|
|
| 68 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 69 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 70 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/rank",
|
|
| 71 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/verbatimrank",
|
|
| 72 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 73 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 74 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 75 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonepithet,
|
|
| 76 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank,
|
|
| 77 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 78 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank,
|
|
| 60 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 61 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 62 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 63 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 64 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 65 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 66 |
auth,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName.
|
|
| 67 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,Brad: This is the author of the scientificName.
|
|
| 68 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 69 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 70 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
|
| 71 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
|
|
| 72 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 73 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 74 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 75 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
|
| 76 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank,
|
|
| 77 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 78 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/verbatimrank,
|
|
| 79 | 79 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 80 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,Brad: OMIT
|
|
| 81 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,
|
|
| 82 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT
|
|
| 83 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 84 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT
|
|
| 85 |
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",Brad: OMIT
|
|
| 86 |
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 87 |
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",Brad: OMIT
|
|
| 88 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/species,Brad: OMIT
|
|
| 80 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/family,Brad: OMIT
|
|
| 81 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/genus,
|
|
| 82 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT
|
|
| 83 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 84 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT
|
|
| 85 |
OrigSpecies,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",Brad: OMIT
|
|
| 86 |
OrigGenus,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 87 |
OrigFamily,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",Brad: OMIT
|
|
| 88 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/species,Brad: OMIT
|
|
| 89 | 89 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| 90 | 90 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 91 | 91 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
TNRS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
Name_matched,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 3 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 4 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/2",
|
|
| 5 |
Name_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 6 |
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",Contains family based on matched name
|
|
| 7 |
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 8 |
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 9 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 10 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 11 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 12 |
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
|
|
| 13 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/author,
|
|
| 14 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/family,
|
|
| 15 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 16 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 17 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 18 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/identifyingtaxonomicname/_alt/2/_join_words/2,
|
|
| 19 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonepithet",
|
|
| 20 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 21 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/parent_id/taxonconcept/rank,
|
|
| 22 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/parent_id/taxonconcept/verbatimrank,
|
|
| 23 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/rank,
|
|
| 24 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/taxonomicname,
|
|
| 25 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_taxonconcept_set_matched_concept_id/matched_concept_id/taxonconcept/verbatimrank,
|
|
| 26 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,Contains author based on matched name
|
|
| 27 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,Contains family based on matched name
|
|
| 28 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 29 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/rank",
|
|
| 30 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/verbatimrank",
|
|
| 31 |
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 32 |
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 33 |
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",Contains family based on matched name
|
|
| 34 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonepithet,
|
|
| 35 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank,
|
|
| 36 |
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode,
|
|
| 37 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 38 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/author,Contains author in original string
|
|
| 39 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/family,Contains family in original string (uncommon)
|
|
| 40 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/genus,
|
|
| 41 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/identifyingtaxonomicname,
|
|
| 42 |
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/matched_concept_fit_fraction/_max/1,
|
|
| 43 |
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/matched_concept_fit_fraction/_max/2,
|
|
| 44 |
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/matched_concept_fit_fraction/_max/3,
|
|
| 45 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/matched_concept_fit_fraction/_max/4,Assuming is a fraction based on the range of values
|
|
| 46 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/species,
|
|
| 47 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 48 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/taxonepithet/_if[@name=""if has verbatim name""]/then",
|
|
| 49 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/taxonomicname,
|
|
| 50 |
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonconcept:[@fkey=matched_concept_id]/verbatimrank,
|
|
| 51 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 52 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonepithet/_if[@name=""if has verbatim name""]/else",
|
|
| 53 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
|
|
| 54 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank,
|
|
| 3 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 4 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/2",
|
|
| 5 |
Name_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 6 |
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",Contains family based on matched name
|
|
| 7 |
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 8 |
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 9 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 10 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 11 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 12 |
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
|
|
| 13 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/author,
|
|
| 14 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/family,
|
|
| 15 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 16 |
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 17 |
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 18 |
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
|
|
| 19 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonepithet",
|
|
| 20 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 21 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/rank,
|
|
| 22 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/verbatimrank,
|
|
| 23 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/rank,
|
|
| 24 |
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname,
|
|
| 25 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/verbatimrank,
|
|
| 26 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,Contains author based on matched name
|
|
| 27 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,Contains family based on matched name
|
|
| 28 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 29 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
|
|
| 30 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
|
|
| 31 |
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 32 |
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 33 |
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",Contains family based on matched name
|
|
| 34 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
|
| 35 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank,
|
|
| 36 |
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode,
|
|
| 37 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 38 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 39 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/else",
|
|
| 40 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/author,Contains author in original string
|
|
| 41 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/family,Contains family in original string (uncommon)
|
|
| 42 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/genus,
|
|
| 43 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/identifyingtaxonomicname,
|
|
| 44 |
Family_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/1,
|
|
| 45 |
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2,
|
|
| 46 |
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3,
|
|
| 47 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,Assuming is a fraction based on the range of values
|
|
| 48 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/species,
|
|
| 49 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 50 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet/_if[@name=""if has verbatim name""]/then",
|
|
| 51 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname,
|
|
| 52 |
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/verbatimrank,
|
|
| 53 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 54 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/verbatimrank,
|
|
| 55 | 55 |
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid ** |
| 56 | 56 |
Accepted_name_species,,** No join mapping for *Accepted_name_species ** Also contains genus. Omitted because Accepted_name contains more info. |
| 57 | 57 |
Accepted_name_url,,** No join mapping for *Accepted_name_url ** |
| inputs/U/Specimen/test.xml.ref | ||
|---|---|---|
| 66 | 66 |
<sourceaccessioncode>$ID</sourceaccessioncode> |
| 67 | 67 |
<taxondetermination> |
| 68 | 68 |
<party_id><party><fullname>$Detby</fullname></party></party_id> |
| 69 |
<taxonconcept_id>
|
|
| 70 |
<taxonconcept>
|
|
| 71 |
<matched_concept_id>
|
|
| 72 |
<taxonconcept>
|
|
| 69 |
<taxonlabel_id>
|
|
| 70 |
<taxonlabel>
|
|
| 71 |
<matched_label_id>
|
|
| 72 |
<taxonlabel>
|
|
| 73 | 73 |
<creator_id> |
| 74 | 74 |
<party> |
| 75 | 75 |
<creator_id>0</creator_id> |
| ... | ... | |
| 82 | 82 |
<2>$Genus</2> |
| 83 | 83 |
</_join_words> |
| 84 | 84 |
</identifyingtaxonomicname> |
| 85 |
</taxonconcept>
|
|
| 86 |
</matched_concept_id>
|
|
| 85 |
</taxonlabel>
|
|
| 86 |
</matched_label_id>
|
|
| 87 | 87 |
<creator_id> |
| 88 | 88 |
<_simplifyPath> |
| 89 | 89 |
<next>creator_id</next> |
| ... | ... | |
| 93 | 93 |
<family>$Family</family> |
| 94 | 94 |
<genus>$Genus</genus> |
| 95 | 95 |
<parent_id> |
| 96 |
<taxonconcept>
|
|
| 96 |
<taxonlabel>
|
|
| 97 | 97 |
<parent_id> |
| 98 |
<taxonconcept>
|
|
| 98 |
<taxonlabel>
|
|
| 99 | 99 |
<rank>cultivar</rank> |
| 100 | 100 |
<parent_id> |
| 101 |
<taxonconcept>
|
|
| 101 |
<taxonlabel>
|
|
| 102 | 102 |
<rank>forma</rank> |
| 103 | 103 |
<parent_id> |
| 104 |
<taxonconcept>
|
|
| 104 |
<taxonlabel>
|
|
| 105 | 105 |
<rank>variety</rank> |
| 106 | 106 |
<parent_id> |
| 107 |
<taxonconcept>
|
|
| 107 |
<taxonlabel>
|
|
| 108 | 108 |
<rank>subspecies</rank> |
| 109 | 109 |
<parent_id> |
| 110 |
<taxonconcept>
|
|
| 110 |
<taxonlabel>
|
|
| 111 | 111 |
<rank>species</rank> |
| 112 | 112 |
<parent_id> |
| 113 |
<taxonconcept>
|
|
| 113 |
<taxonlabel>
|
|
| 114 | 114 |
<rank>genus</rank> |
| 115 | 115 |
<taxonepithet>$Genus</taxonepithet> |
| 116 | 116 |
<parent_id> |
| 117 |
<taxonconcept>
|
|
| 117 |
<taxonlabel>
|
|
| 118 | 118 |
<rank>family</rank> |
| 119 | 119 |
<taxonepithet>$Family</taxonepithet> |
| 120 |
</taxonconcept>
|
|
| 120 |
</taxonlabel>
|
|
| 121 | 121 |
</parent_id> |
| 122 |
</taxonconcept>
|
|
| 122 |
</taxonlabel>
|
|
| 123 | 123 |
</parent_id> |
| 124 |
</taxonconcept>
|
|
| 124 |
</taxonlabel>
|
|
| 125 | 125 |
</parent_id> |
| 126 |
</taxonconcept>
|
|
| 126 |
</taxonlabel>
|
|
| 127 | 127 |
</parent_id> |
| 128 |
</taxonconcept>
|
|
| 128 |
</taxonlabel>
|
|
| 129 | 129 |
</parent_id> |
| 130 |
</taxonconcept>
|
|
| 130 |
</taxonlabel>
|
|
| 131 | 131 |
</parent_id> |
| 132 |
</taxonconcept>
|
|
| 132 |
</taxonlabel>
|
|
| 133 | 133 |
</parent_id> |
| 134 |
</taxonconcept>
|
|
| 134 |
</taxonlabel>
|
|
| 135 | 135 |
</parent_id> |
| 136 | 136 |
<creationdate> |
| 137 | 137 |
<_date> |
| ... | ... | |
| 144 | 144 |
</year> |
| 145 | 145 |
</_date> |
| 146 | 146 |
</creationdate> |
| 147 |
</taxonconcept>
|
|
| 148 |
</taxonconcept_id>
|
|
| 147 |
</taxonlabel>
|
|
| 148 |
</taxonlabel_id>
|
|
| 149 | 149 |
<taxonfit>$cf</taxonfit> |
| 150 | 150 |
<determinationdate> |
| 151 | 151 |
<_date> |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
ScientificNameOriginal,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/1", |
| 15 | 15 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 16 | 16 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 17 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 18 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 19 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 20 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 21 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 22 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 23 |
AuthorOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 24 |
AuthorOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,
|
|
| 25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 28 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 31 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonepithet,
|
|
| 32 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 33 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
|
|
| 34 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/family,
|
|
| 35 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/genus,
|
|
| 36 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 37 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 38 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 39 |
GBIFGenusOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 40 |
GBIFFamilyOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 41 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonconcept/taxonomicname,
|
|
| 17 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 18 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 19 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 20 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 21 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 22 |
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 23 |
AuthorOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 24 |
AuthorOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
|
|
| 25 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 28 |
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 31 |
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
|
|
| 32 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 33 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 34 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/family,
|
|
| 35 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/genus,
|
|
| 36 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 37 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 38 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 39 |
GBIFGenusOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 40 |
GBIFFamilyOriginal,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 41 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname,
|
|
| 42 | 42 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 43 | 43 |
CatalogNO,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 44 | 44 |
Locality,/location/locationnarrative/_merge/1, |
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 11 | 11 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
| 12 | 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 13 | 13 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 17 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 18 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 19 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 17 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 18 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 19 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 20 | 20 |
locality,/location/locationnarrative/_merge/1, |
| 21 | 21 |
continent,/location/locationplace/*_id/placepath/continent, |
| 22 | 22 |
basisOfRecord,,** No join mapping for basisOfRecord ** |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 40 | 40 |
</isnative> |
| 41 | 41 |
<sourceaccessioncode>$id</sourceaccessioncode> |
| 42 | 42 |
<taxondetermination> |
| 43 |
<taxonconcept_id>
|
|
| 44 |
<taxonconcept>
|
|
| 45 |
<matched_concept_id>
|
|
| 46 |
<taxonconcept>
|
|
| 43 |
<taxonlabel_id>
|
|
| 44 |
<taxonlabel>
|
|
| 45 |
<matched_label_id>
|
|
| 46 |
<taxonlabel>
|
|
| 47 | 47 |
<creator_id> |
| 48 | 48 |
<party> |
| 49 | 49 |
<creator_id>0</creator_id> |
| ... | ... | |
| 56 | 56 |
<2>$genus</2> |
| 57 | 57 |
</_join_words> |
| 58 | 58 |
</identifyingtaxonomicname> |
| 59 |
</taxonconcept>
|
|
| 60 |
</matched_concept_id>
|
|
| 59 |
</taxonlabel>
|
|
| 60 |
</matched_label_id>
|
|
| 61 | 61 |
<family>$family</family> |
| 62 | 62 |
<genus>$genus</genus> |
| 63 | 63 |
<parent_id> |
| 64 |
<taxonconcept>
|
|
| 64 |
<taxonlabel>
|
|
| 65 | 65 |
<parent_id> |
| 66 |
<taxonconcept>
|
|
| 66 |
<taxonlabel>
|
|
| 67 | 67 |
<rank>cultivar</rank> |
| 68 | 68 |
<parent_id> |
| 69 |
<taxonconcept>
|
|
| 69 |
<taxonlabel>
|
|
| 70 | 70 |
<rank>forma</rank> |
| 71 | 71 |
<parent_id> |
| 72 |
<taxonconcept>
|
|
| 72 |
<taxonlabel>
|
|
| 73 | 73 |
<rank>variety</rank> |
| 74 | 74 |
<parent_id> |
| 75 |
<taxonconcept>
|
|
| 75 |
<taxonlabel>
|
|
| 76 | 76 |
<rank>subspecies</rank> |
| 77 | 77 |
<parent_id> |
| 78 |
<taxonconcept>
|
|
| 78 |
<taxonlabel>
|
|
| 79 | 79 |
<rank>species</rank> |
| 80 | 80 |
<parent_id> |
| 81 |
<taxonconcept>
|
|
| 81 |
<taxonlabel>
|
|
| 82 | 82 |
<rank>genus</rank> |
| 83 | 83 |
<taxonepithet>$genus</taxonepithet> |
| 84 | 84 |
<parent_id> |
| 85 |
<taxonconcept>
|
|
| 85 |
<taxonlabel>
|
|
| 86 | 86 |
<rank>family</rank> |
| 87 | 87 |
<taxonepithet>$family</taxonepithet> |
| 88 |
</taxonconcept>
|
|
| 88 |
</taxonlabel>
|
|
| 89 | 89 |
</parent_id> |
| 90 |
</taxonconcept>
|
|
| 90 |
</taxonlabel>
|
|
| 91 | 91 |
</parent_id> |
| 92 |
</taxonconcept>
|
|
| 92 |
</taxonlabel>
|
|
| 93 | 93 |
</parent_id> |
| 94 |
</taxonconcept>
|
|
| 94 |
</taxonlabel>
|
|
| 95 | 95 |
</parent_id> |
| 96 |
</taxonconcept>
|
|
| 96 |
</taxonlabel>
|
|
| 97 | 97 |
</parent_id> |
| 98 |
</taxonconcept>
|
|
| 98 |
</taxonlabel>
|
|
| 99 | 99 |
</parent_id> |
| 100 |
</taxonconcept>
|
|
| 100 |
</taxonlabel>
|
|
| 101 | 101 |
</parent_id> |
| 102 |
</taxonconcept>
|
|
| 102 |
</taxonlabel>
|
|
| 103 | 103 |
</parent_id> |
| 104 |
</taxonconcept>
|
|
| 105 |
</taxonconcept_id>
|
|
| 104 |
</taxonlabel>
|
|
| 105 |
</taxonlabel_id>
|
|
| 106 | 106 |
</taxondetermination> |
| 107 | 107 |
</taxonoccurrence> |
| 108 | 108 |
</locationevent> |
| inputs/test_taxonomic_names/Taxon/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
test_taxonomic_names,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 4 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/sourceaccessioncode, |
|
| 5 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname, |
|
| 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 4 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode, |
|
| 5 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname, |
|
| inputs/test_taxonomic_names/Taxon/test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<locationevent> |
| 8 | 8 |
<taxonoccurrence> |
| 9 | 9 |
<taxondetermination> |
| 10 |
<taxonconcept_id>
|
|
| 11 |
<taxonconcept>
|
|
| 12 |
<matched_concept_id>
|
|
| 13 |
<taxonconcept>
|
|
| 10 |
<taxonlabel_id>
|
|
| 11 |
<taxonlabel>
|
|
| 12 |
<matched_label_id>
|
|
| 13 |
<taxonlabel>
|
|
| 14 | 14 |
<creator_id> |
| 15 | 15 |
<party> |
| 16 | 16 |
<creator_id>0</creator_id> |
| ... | ... | |
| 18 | 18 |
</party> |
| 19 | 19 |
</creator_id> |
| 20 | 20 |
<identifyingtaxonomicname>$scientificName</identifyingtaxonomicname> |
| 21 |
</taxonconcept>
|
|
| 22 |
</matched_concept_id>
|
|
| 21 |
</taxonlabel>
|
|
| 22 |
</matched_label_id>
|
|
| 23 | 23 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
| 24 | 24 |
<taxonomicname>$scientificName</taxonomicname> |
| 25 |
</taxonconcept>
|
|
| 26 |
</taxonconcept_id>
|
|
| 25 |
</taxonlabel>
|
|
| 26 |
</taxonlabel_id>
|
|
| 27 | 27 |
</taxondetermination> |
| 28 | 28 |
</taxonoccurrence> |
| 29 | 29 |
</locationevent> |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 21 | 21 |
darwin:CollectorNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1", |
| 22 | 22 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 23 | 23 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 24 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 25 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 26 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 27 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 28 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 29 |
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 30 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,
|
|
| 31 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 32 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 33 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 34 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonepithet",
|
|
| 35 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 36 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 37 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 38 |
darwin:Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonepithet",
|
|
| 39 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonepithet",
|
|
| 40 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonepithet",
|
|
| 41 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonepithet",
|
|
| 42 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 43 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
|
|
| 44 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 45 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 46 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 24 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 25 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 26 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 27 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 28 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 29 |
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 30 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
|
|
| 31 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 32 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 33 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 34 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 35 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 36 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 37 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 38 |
darwin:Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
|
| 39 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
|
| 40 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
|
| 41 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
|
| 42 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 43 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 44 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 45 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 46 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 47 | 47 |
darwin:Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 48 | 48 |
darwin:CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 49 | 49 |
darwin:MaximumDepth,/location/locationevent/waterdepth_m/_avg/max, |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 32 | 32 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 33 | 33 |
Comments,,** No join mapping for *Comments ** |
| 34 | 34 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 42 | 42 |
<authortaxoncode>$Tree Number</authortaxoncode> |
| 43 | 43 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
| 44 | 44 |
<taxondetermination> |
| 45 |
<taxonconcept_id>
|
|
| 46 |
<taxonconcept>
|
|
| 47 |
<matched_concept_id>
|
|
| 48 |
<taxonconcept>
|
|
| 45 |
<taxonlabel_id>
|
|
| 46 |
<taxonlabel>
|
|
| 47 |
<matched_label_id>
|
|
| 48 |
<taxonlabel>
|
|
| 49 | 49 |
<creator_id> |
| 50 | 50 |
<party> |
| 51 | 51 |
<creator_id>0</creator_id> |
| ... | ... | |
| 59 | 59 |
<3>$Species</3> |
| 60 | 60 |
</_join_words> |
| 61 | 61 |
</identifyingtaxonomicname> |
| 62 |
</taxonconcept>
|
|
| 63 |
</matched_concept_id>
|
|
| 62 |
</taxonlabel>
|
|
| 63 |
</matched_label_id>
|
|
| 64 | 64 |
<family>$Family</family> |
| 65 | 65 |
<genus>$Genus</genus> |
| 66 | 66 |
<parent_id> |
| 67 |
<taxonconcept>
|
|
| 67 |
<taxonlabel>
|
|
| 68 | 68 |
<parent_id> |
| 69 |
<taxonconcept>
|
|
| 69 |
<taxonlabel>
|
|
| 70 | 70 |
<rank>cultivar</rank> |
| 71 | 71 |
<parent_id> |
| 72 |
<taxonconcept>
|
|
| 72 |
<taxonlabel>
|
|
| 73 | 73 |
<rank>forma</rank> |
| 74 | 74 |
<parent_id> |
| 75 |
<taxonconcept>
|
|
| 75 |
<taxonlabel>
|
|
| 76 | 76 |
<rank>variety</rank> |
| 77 | 77 |
<parent_id> |
| 78 |
<taxonconcept>
|
|
| 78 |
<taxonlabel>
|
|
| 79 | 79 |
<rank>subspecies</rank> |
| 80 | 80 |
<parent_id> |
| 81 |
<taxonconcept>
|
|
| 81 |
<taxonlabel>
|
|
| 82 | 82 |
<rank>species</rank> |
| 83 | 83 |
<taxonepithet>$Species</taxonepithet> |
| 84 | 84 |
<parent_id> |
| 85 |
<taxonconcept>
|
|
| 85 |
<taxonlabel>
|
|
| 86 | 86 |
<rank>genus</rank> |
| 87 | 87 |
<taxonepithet>$Genus</taxonepithet> |
| 88 | 88 |
<parent_id> |
| 89 |
<taxonconcept>
|
|
| 89 |
<taxonlabel>
|
|
| 90 | 90 |
<rank>family</rank> |
| 91 | 91 |
<taxonepithet>$Family</taxonepithet> |
| 92 |
</taxonconcept>
|
|
| 92 |
</taxonlabel>
|
|
| 93 | 93 |
</parent_id> |
| 94 |
</taxonconcept>
|
|
| 94 |
</taxonlabel>
|
|
| 95 | 95 |
</parent_id> |
| 96 |
</taxonconcept>
|
|
| 96 |
</taxonlabel>
|
|
| 97 | 97 |
</parent_id> |
| 98 |
</taxonconcept>
|
|
| 98 |
</taxonlabel>
|
|
| 99 | 99 |
</parent_id> |
| 100 |
</taxonconcept>
|
|
| 100 |
</taxonlabel>
|
|
| 101 | 101 |
</parent_id> |
| 102 |
</taxonconcept>
|
|
| 102 |
</taxonlabel>
|
|
| 103 | 103 |
</parent_id> |
| 104 |
</taxonconcept>
|
|
| 104 |
</taxonlabel>
|
|
| 105 | 105 |
</parent_id> |
| 106 |
</taxonconcept>
|
|
| 106 |
</taxonlabel>
|
|
| 107 | 107 |
</parent_id> |
| 108 | 108 |
<species>$Species</species> |
| 109 |
</taxonconcept>
|
|
| 110 |
</taxonconcept_id>
|
|
| 109 |
</taxonlabel>
|
|
| 110 |
</taxonlabel_id>
|
|
| 111 | 111 |
</taxondetermination> |
| 112 | 112 |
<verbatimcollectorname>$Names of Collectors</verbatimcollectorname> |
| 113 | 113 |
</taxonoccurrence> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 28 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 29 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 32 | 32 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 33 | 33 |
Comments,,** No join mapping for *Comments ** |
| 34 | 34 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 42 | 42 |
<authortaxoncode>$Tree Number</authortaxoncode> |
| 43 | 43 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
| 44 | 44 |
<taxondetermination> |
| 45 |
<taxonconcept_id>
|
|
| 46 |
<taxonconcept>
|
|
| 47 |
<matched_concept_id>
|
|
| 48 |
<taxonconcept>
|
|
| 45 |
<taxonlabel_id>
|
|
| 46 |
<taxonlabel>
|
|
| 47 |
<matched_label_id>
|
|
| 48 |
<taxonlabel>
|
|
| 49 | 49 |
<creator_id> |
| 50 | 50 |
<party> |
| 51 | 51 |
<creator_id>0</creator_id> |
| ... | ... | |
| 59 | 59 |
<3>$Species</3> |
| 60 | 60 |
</_join_words> |
| 61 | 61 |
</identifyingtaxonomicname> |
| 62 |
</taxonconcept>
|
|
| 63 |
</matched_concept_id>
|
|
| 62 |
</taxonlabel>
|
|
| 63 |
</matched_label_id>
|
|
| 64 | 64 |
<family>$Family</family> |
| 65 | 65 |
<genus>$Genus</genus> |
| 66 | 66 |
<parent_id> |
| 67 |
<taxonconcept>
|
|
| 67 |
<taxonlabel>
|
|
| 68 | 68 |
<parent_id> |
| 69 |
<taxonconcept>
|
|
| 69 |
<taxonlabel>
|
|
| 70 | 70 |
<rank>cultivar</rank> |
| 71 | 71 |
<parent_id> |
| 72 |
<taxonconcept>
|
|
| 72 |
<taxonlabel>
|
|
| 73 | 73 |
<rank>forma</rank> |
| 74 | 74 |
<parent_id> |
| 75 |
<taxonconcept>
|
|
| 75 |
<taxonlabel>
|
|
| 76 | 76 |
<rank>variety</rank> |
| 77 | 77 |
<parent_id> |
| 78 |
<taxonconcept>
|
|
| 78 |
<taxonlabel>
|
|
| 79 | 79 |
<rank>subspecies</rank> |
| 80 | 80 |
<parent_id> |
| 81 |
<taxonconcept>
|
|
| 81 |
<taxonlabel>
|
|
| 82 | 82 |
<rank>species</rank> |
| 83 | 83 |
<taxonepithet>$Species</taxonepithet> |
| 84 | 84 |
<parent_id> |
| 85 |
<taxonconcept>
|
|
| 85 |
<taxonlabel>
|
|
| 86 | 86 |
<rank>genus</rank> |
| 87 | 87 |
<taxonepithet>$Genus</taxonepithet> |
| 88 | 88 |
<parent_id> |
| 89 |
<taxonconcept>
|
|
| 89 |
<taxonlabel>
|
|
| 90 | 90 |
<rank>family</rank> |
| 91 | 91 |
<taxonepithet>$Family</taxonepithet> |
| 92 |
</taxonconcept>
|
|
| 92 |
</taxonlabel>
|
|
| 93 | 93 |
</parent_id> |
| 94 |
</taxonconcept>
|
|
| 94 |
</taxonlabel>
|
|
| 95 | 95 |
</parent_id> |
| 96 |
</taxonconcept>
|
|
| 96 |
</taxonlabel>
|
|
| 97 | 97 |
</parent_id> |
| 98 |
</taxonconcept>
|
|
| 98 |
</taxonlabel>
|
|
| 99 | 99 |
</parent_id> |
| 100 |
</taxonconcept>
|
|
| 100 |
</taxonlabel>
|
|
| 101 | 101 |
</parent_id> |
| 102 |
</taxonconcept>
|
|
| 102 |
</taxonlabel>
|
|
| 103 | 103 |
</parent_id> |
| 104 |
</taxonconcept>
|
|
| 104 |
</taxonlabel>
|
|
| 105 | 105 |
</parent_id> |
| 106 |
</taxonconcept>
|
|
| 106 |
</taxonlabel>
|
|
| 107 | 107 |
</parent_id> |
| 108 | 108 |
<species>$Species</species> |
| 109 |
</taxonconcept>
|
|
| 110 |
</taxonconcept_id>
|
|
| 109 |
</taxonlabel>
|
|
| 110 |
</taxonlabel_id>
|
|
| 111 | 111 |
</taxondetermination> |
| 112 | 112 |
<verbatimcollectorname>$Names of Collectors</verbatimcollectorname> |
| 113 | 113 |
</taxonoccurrence> |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 27 | 27 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 28 | 28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 29 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 32 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 33 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 35 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,
|
|
| 36 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 37 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
|
|
| 38 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
|
|
| 39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=subspecies]/taxonepithet",
|
|
| 40 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
|
|
| 41 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
|
|
| 42 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
|
|
| 43 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonepithet",
|
|
| 44 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonepithet",
|
|
| 45 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonepithet",
|
|
| 46 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonepithet",
|
|
| 47 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
|
|
| 48 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
|
|
| 49 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 50 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 51 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 29 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 32 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 33 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 35 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
|
|
| 36 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 37 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
|
|
| 38 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
|
|
| 39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 40 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 41 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 42 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 43 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
|
| 44 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
|
| 45 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
|
| 46 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
|
| 47 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
|
|
| 48 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 49 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 50 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 51 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 52 | 52 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 53 | 53 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 54 | 54 |
MaximumDepth,/location/locationevent/waterdepth_m/_avg/max, |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 107 | 107 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
| 108 | 108 |
<taxondetermination> |
| 109 | 109 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
| 110 |
<taxonconcept_id>
|
|
| 111 |
<taxonconcept>
|
|
| 112 |
<matched_concept_id>
|
|
| 113 |
<taxonconcept>
|
|
| 110 |
<taxonlabel_id>
|
|
| 111 |
<taxonlabel>
|
|
| 112 |
<matched_label_id>
|
|
| 113 |
<taxonlabel>
|
|
| 114 | 114 |
<creator_id> |
| 115 | 115 |
<party> |
| 116 | 116 |
<creator_id>0</creator_id> |
| ... | ... | |
| 135 | 135 |
<2>$ScientificNameAuthor</2> |
| 136 | 136 |
</_join_words> |
| 137 | 137 |
</identifyingtaxonomicname> |
| 138 |
</taxonconcept>
|
|
| 139 |
</matched_concept_id>
|
|
| 138 |
</taxonlabel>
|
|
| 139 |
</matched_label_id>
|
|
| 140 | 140 |
<author>$ScientificNameAuthor</author> |
| 141 | 141 |
<creator_id> |
| 142 | 142 |
<_simplifyPath> |
| ... | ... | |
| 147 | 147 |
<family>$Family</family> |
| 148 | 148 |
<genus>$Genus</genus> |
| 149 | 149 |
<parent_id> |
| 150 |
<taxonconcept>
|
|
| 150 |
<taxonlabel>
|
|
| 151 | 151 |
<parent_id> |
| 152 |
<taxonconcept>
|
|
| 152 |
<taxonlabel>
|
|
| 153 | 153 |
<rank>cultivar</rank> |
| 154 | 154 |
<parent_id> |
| 155 |
<taxonconcept>
|
|
| 155 |
<taxonlabel>
|
|
| 156 | 156 |
<rank>forma</rank> |
| 157 | 157 |
<parent_id> |
| 158 |
<taxonconcept>
|
|
| 158 |
<taxonlabel>
|
|
| 159 | 159 |
<rank>variety</rank> |
| 160 | 160 |
<parent_id> |
| 161 |
<taxonconcept>
|
|
| 161 |
<taxonlabel>
|
|
| 162 | 162 |
<rank>subspecies</rank> |
| 163 | 163 |
<taxonepithet>$Subspecies</taxonepithet> |
| 164 | 164 |
<parent_id> |
| 165 |
<taxonconcept>
|
|
| 165 |
<taxonlabel>
|
|
| 166 | 166 |
<rank>species</rank> |
| 167 | 167 |
<taxonepithet>$Species</taxonepithet> |
| 168 | 168 |
<parent_id> |
| 169 |
<taxonconcept>
|
|
| 169 |
<taxonlabel>
|
|
| 170 | 170 |
<rank>genus</rank> |
| 171 | 171 |
<taxonepithet>$Genus</taxonepithet> |
| 172 | 172 |
<parent_id> |
| 173 |
<taxonconcept>
|
|
| 173 |
<taxonlabel>
|
|
| 174 | 174 |
<rank>family</rank> |
| 175 | 175 |
<taxonepithet>$Family</taxonepithet> |
| 176 | 176 |
<parent_id> |
| 177 |
<taxonconcept> |
|
| 177 |
<taxonlabel> |
|
Also available in: Unified diff
schemas/vegbien.sql: Renamed taxonconcept to taxonlabel per today's conference call, where it was decided that taxonconcept contained too many unrelated fields to be purely a taxon concept