Revision 5608
Added by Aaron Marcuse-Kubitza almost 12 years ago
| VegBIEN.csv | ||
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| 27 | 27 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 28 | 28 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 29 | 29 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 30 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
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family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
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scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_concept_id/taxonconcept:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
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scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/author,
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
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family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/family,
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genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/genus,
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/rank",
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/_if[@name=""if has explicit parent""]/else/verbatimrank",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=species]/taxonepithet",
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=genus]/taxonepithet",
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family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=family]/taxonepithet",
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order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=order]/taxonepithet",
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class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=class]/taxonepithet",
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phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=phylum]/taxonepithet",
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kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonconcept[rank=_val]/parent_id""]/taxonconcept[rank=kingdom]/taxonepithet",
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infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/parent_id/taxonconcept/taxonepithet,
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taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/rank,
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specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/species,
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scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/taxonomicname,
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taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonconcept/verbatimrank,
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scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
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family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
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scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/2",
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scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
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family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
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genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
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family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
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order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
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class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
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phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
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kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
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infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
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taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank,
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specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
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scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
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taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/verbatimrank,
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| 56 | 56 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
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dateIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonconcept/creationdate}/_alt/1/_*/date/_dateRangeStart/value",
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dateIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/{determinationdate,*_id/taxonlabel/creationdate}/_alt/1/_*/date/_dateRangeStart/value",
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| 58 | 58 |
recordedBy,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 59 | 59 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 60 | 60 |
locality,/location/locationnarrative/_merge/1, |
Also available in: Unified diff
schemas/vegbien.sql: Renamed taxonconcept to taxonlabel per today's conference call, where it was decided that taxonconcept contained too many unrelated fields to be purely a taxon concept