Revision 5612
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,Contains author based on matched name |
| 27 | 27 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,Contains family based on matched name |
| 28 | 28 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus, |
| 29 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 30 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/else", |
|
| 29 | 31 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 30 | 32 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank", |
| 31 | 33 |
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| ... | ... | |
| 35 | 37 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank, |
| 36 | 38 |
Name_matched_url,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode, |
| 37 | 39 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species, |
| 38 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 39 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/else", |
|
| 40 | 40 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/author,Contains author in original string |
| 41 | 41 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/family,Contains family in original string (uncommon) |
| 42 | 42 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/genus, |
| ... | ... | |
| 45 | 45 |
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2, |
| 46 | 46 |
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3, |
| 47 | 47 |
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,Assuming is a fraction based on the range of values |
| 48 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 49 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/then", |
|
| 48 | 50 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/species, |
| 49 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 50 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet/_if[@name=""if has verbatim name""]/then", |
|
| 51 | 51 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 52 | 52 |
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/verbatimrank, |
| 53 | 53 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname, |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 177 | 177 |
<4>$Overall_score</4> |
| 178 | 178 |
</_max> |
| 179 | 179 |
</matched_label_fit_fraction> |
| 180 |
<morphospecies>$Unmatched_terms</morphospecies> |
|
| 180 | 181 |
<species>$Specific_epithet_matched</species> |
| 181 |
<taxonepithet>$Unmatched_terms</taxonepithet> |
|
| 182 | 182 |
<taxonomicname>$Name_matched</taxonomicname> |
| 183 | 183 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
| 184 | 184 |
</taxonlabel> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 191 | 191 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
| 192 | 192 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family, |
| 193 | 193 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus, |
| 194 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 195 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/else", |
|
| 194 | 196 |
parentScientificNameID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| 195 | 197 |
parentTaxonConceptID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| 196 | 198 |
parentTaxonID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| ... | ... | |
| 214 | 216 |
taxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode, |
| 215 | 217 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species, |
| 216 | 218 |
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet, |
| 217 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 218 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/else", |
|
| 219 | 219 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/author, |
| 220 | 220 |
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/family, |
| 221 | 221 |
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/genus, |
| ... | ... | |
| 224 | 224 |
matchedGenusFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2, |
| 225 | 225 |
matchedSpeciesFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3, |
| 226 | 226 |
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4, |
| 227 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 228 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/then", |
|
| 227 | 229 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/species, |
| 228 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 229 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet/_if[@name=""if has verbatim name""]/then", |
|
| 230 | 230 |
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 231 | 231 |
verbatimTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/verbatimrank, |
| 232 | 232 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 191 | 191 |
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/creator_id/party/fullname, |
| 192 | 192 |
family,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/family, |
| 193 | 193 |
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/genus, |
| 194 |
verbatimScientificNameWithAuthorship,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 195 |
morphospecies,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/else", |
|
| 194 | 196 |
parentScientificNameID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| 195 | 197 |
parentTaxonConceptID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| 196 | 198 |
parentTaxonID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| ... | ... | |
| 214 | 216 |
taxonID,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/sourceaccessioncode, |
| 215 | 217 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/species, |
| 216 | 218 |
taxonName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonepithet, |
| 217 |
verbatimScientificNameWithAuthorship,"//taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 218 |
morphospecies,"//taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/else", |
|
| 219 | 219 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/author, |
| 220 | 220 |
verbatimFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/family, |
| 221 | 221 |
verbatimGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/genus, |
| ... | ... | |
| 224 | 224 |
matchedGenusFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
| 225 | 225 |
matchedSpeciesFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
| 226 | 226 |
matchedTaxonFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
| 227 |
verbatimScientificNameWithAuthorship,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 228 |
morphospecies,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/then", |
|
| 227 | 229 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/species, |
| 228 |
verbatimScientificNameWithAuthorship,"//taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 229 |
morphospecies,"//taxonlabel/taxonepithet/_if[@name=""if has verbatim name""]/then", |
|
| 230 | 230 |
verbatimScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/taxonomicname, |
| 231 | 231 |
verbatimTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/verbatimrank, |
| 232 | 232 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonomicname, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Remapped morphospecies to new taxonlabel.morphospecies per today's conference call