Revision 5631
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/test_taxonomic_names/Taxon/map.csv | ||
|---|---|---|
| 1 | 1 |
test_taxonomic_names,VegCore,Filter,Comments |
| 2 | 2 |
scientificNameID,scientificNameID,, |
| 3 |
scientificName,scientificName,, |
|
| 3 |
scientificName,binomial,, |
|
| inputs/XAL/Specimen/map.csv | ||
|---|---|---|
| 3 | 3 |
darwin:InstitutionCode,institutionCode,, |
| 4 | 4 |
darwin:CollectionCode,collectionCode,, |
| 5 | 5 |
darwin:CatalogNumber,catalogNumber,, |
| 6 |
darwin:ScientificName,scientificName,,
|
|
| 6 |
darwin:ScientificName,binomial,,
|
|
| 7 | 7 |
darwin:BasisOfRecord,basisOfRecord,, |
| 8 | 8 |
darwin:Kingdom,kingdom,, |
| 9 | 9 |
darwin:Phylum,phylum,, |
| inputs/XAL/Specimen/new_terms.csv | ||
|---|---|---|
| 2 | 2 |
darwin:InstitutionCode,institutionCode,, |
| 3 | 3 |
darwin:CollectionCode,collectionCode,, |
| 4 | 4 |
darwin:CatalogNumber,catalogNumber,, |
| 5 |
darwin:ScientificName,scientificName,,
|
|
| 5 |
darwin:ScientificName,binomial,,
|
|
| 6 | 6 |
darwin:BasisOfRecord,basisOfRecord,, |
| 7 | 7 |
darwin:Kingdom,kingdom,, |
| 8 | 8 |
darwin:Phylum,phylum,, |
| inputs/NY/Specimen/map.csv | ||
|---|---|---|
| 4 | 4 |
InstitutionCode,institutionCode,, |
| 5 | 5 |
CollectionCode,collectionCode,, |
| 6 | 6 |
CatalogNumber,catalogNumber,, |
| 7 |
ScientificName,scientificName,,
|
|
| 7 |
ScientificName,binomial,,
|
|
| 8 | 8 |
BasisOfRecord,basisOfRecord,, |
| 9 | 9 |
Kingdom,kingdom,, |
| 10 | 10 |
Phylum,phylum,, |
| inputs/Madidi/Organism/map.csv | ||
|---|---|---|
| 20 | 20 |
Specie+autor,scientificNameWithAuthorship,, |
| 21 | 21 |
Genera,genus,, |
| 22 | 22 |
Specific epithet,specificEpithet,, |
| 23 |
Species and morphotypes,scientificName,,"Contains less than ""Specie+autor"""
|
|
| 23 |
Species and morphotypes,binomial,,"Contains less than ""Specie+autor"""
|
|
| 24 | 24 |
Autor (revised),scientificNameAuthorship,, |
| 25 | 25 |
Determined by,identifiedBy,, |
| 26 | 26 |
Qualifier,identificationQualifier,, |
| inputs/Madidi/Organism/new_terms.csv | ||
|---|---|---|
| 11 | 11 |
Family (revised),family,, |
| 12 | 12 |
Specie+autor,scientificNameWithAuthorship,, |
| 13 | 13 |
Genera,genus,, |
| 14 |
Species and morphotypes,scientificName,,"Contains less than ""Specie+autor"""
|
|
| 14 |
Species and morphotypes,binomial,,"Contains less than ""Specie+autor"""
|
|
| 15 | 15 |
Autor (revised),scientificNameAuthorship,, |
| 16 | 16 |
Determined by,identifiedBy,, |
| 17 | 17 |
Qualifier,identificationQualifier,, |
| inputs/UNCC/Specimen/map.csv | ||
|---|---|---|
| 15 | 15 |
usdaRank,taxonRank,/_alt/1, |
| 16 | 16 |
infrarank,taxonRank,/_alt/2, |
| 17 | 17 |
infraname,infraspecificEpithet,, |
| 18 |
SciName,scientificName,,
|
|
| 18 |
SciName,binomial,,
|
|
| 19 | 19 |
authors,scientificNameAuthorship,, |
| 20 | 20 |
collector,recordedBy,/_join/1, |
| 21 | 21 |
collector1,recordedBy,/_join/2, |
| inputs/UNCC/Specimen/new_terms.csv | ||
|---|---|---|
| 11 | 11 |
usdaRank,taxonRank,/_alt/1, |
| 12 | 12 |
infrarank,taxonRank,/_alt/2, |
| 13 | 13 |
infraname,infraspecificEpithet,, |
| 14 |
SciName,scientificName,,
|
|
| 14 |
SciName,binomial,,
|
|
| 15 | 15 |
authors,scientificNameAuthorship,, |
| 16 | 16 |
collector1,recordedBy,/_join/2, |
| 17 | 17 |
collector2,recordedBy,/_join/3, |
| inputs/CVS/Organism/map.csv | ||
|---|---|---|
| 9 | 9 |
confidentialityStatus,*confidentialityStatus,, |
| 10 | 10 |
state,stateProvince,, |
| 11 | 11 |
county,county,, |
| 12 |
currentTaxonName sec Weakley 2006,scientificName,,
|
|
| 12 |
currentTaxonName sec Weakley 2006,binomial,,
|
|
| 13 | 13 |
%cover,coverPercent,, |
| inputs/CVS/Organism/new_terms.csv | ||
|---|---|---|
| 2 | 2 |
locationAccuracy-m,coordinateUncertaintyInMeters,, |
| 3 | 3 |
publicLatitude,decimalLatitude,, |
| 4 | 4 |
publicLongitude,decimalLongitude,, |
| 5 |
currentTaxonName sec Weakley 2006,scientificName,,
|
|
| 5 |
currentTaxonName sec Weakley 2006,binomial,,
|
|
| 6 | 6 |
%cover,coverPercent,, |
| inputs/.TNRS/tnrs/map.csv | ||
|---|---|---|
| 2 | 2 |
Name_number,OMIT,,Identifies name only within one TNRS batch. Omitted because not globally unique. |
| 3 | 3 |
Name_submitted,verbatimScientificNameWithAuthorship,, |
| 4 | 4 |
Overall_score,matchedTaxonFit_fraction,,Assuming is a fraction based on the range of values |
| 5 |
Name_matched,verbatimScientificName,,
|
|
| 6 |
Name_matched,scientificName,,
|
|
| 5 |
Name_matched,verbatimBinomial,,
|
|
| 6 |
Name_matched,binomial,,
|
|
| 7 | 7 |
Name_matched_rank,taxonRank,, |
| 8 | 8 |
Name_score,*Name_score,, |
| 9 | 9 |
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name |
| ... | ... | |
| 29 | 29 |
Annotations,*Annotations,, |
| 30 | 30 |
Unmatched_terms,morphospecies,, |
| 31 | 31 |
Taxonomic_status,taxonomicStatus,, |
| 32 |
Accepted_name,acceptedScientificName,,
|
|
| 32 |
Accepted_name,acceptedBinomial,,
|
|
| 33 | 33 |
Accepted_name_author,acceptedScientificNameAuthorship,, |
| 34 | 34 |
Accepted_name_rank,acceptedTaxonRank,, |
| 35 | 35 |
Accepted_name_url,*Accepted_name_url,, |
| inputs/.TNRS/tnrs/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
Name_number,OMIT,,Identifies name only within one TNRS batch. Omitted because not globally unique. |
| 2 | 2 |
Name_submitted,verbatimScientificNameWithAuthorship,, |
| 3 | 3 |
Overall_score,matchedTaxonFit_fraction,,Assuming is a fraction based on the range of values |
| 4 |
Name_matched,verbatimScientificName,,
|
|
| 5 |
Name_matched,scientificName,,
|
|
| 4 |
Name_matched,verbatimBinomial,,
|
|
| 5 |
Name_matched,binomial,,
|
|
| 6 | 6 |
Name_matched_rank,taxonRank,, |
| 7 | 7 |
Name_matched_author,scientificNameAuthorship,,Contains author based on matched name |
| 8 | 8 |
Name_matched_url,scientificNameID,, |
| ... | ... | |
| 23 | 23 |
Infraspecific_epithet_2_matched,UNUSED,, |
| 24 | 24 |
Infraspecific_epithet_2_score,UNUSED,, |
| 25 | 25 |
Unmatched_terms,morphospecies,, |
| 26 |
Accepted_name,acceptedScientificName,,
|
|
| 26 |
Accepted_name,acceptedBinomial,,
|
|
| 27 | 27 |
Accepted_name_author,acceptedScientificNameAuthorship,, |
| 28 | 28 |
Accepted_name_rank,acceptedTaxonRank,, |
| 29 | 29 |
Accepted_name_family,acceptedFamily,, |
| inputs/ARIZ/Specimen/map.csv | ||
|---|---|---|
| 42 | 42 |
MinimumDepthInMeters,minimumDepthInMeters,, |
| 43 | 43 |
MaximumDepthInMeters,maximumDepthInMeters,, |
| 44 | 44 |
VerbatimDepth,verbatimDepth,, |
| 45 |
ScientificName,scientificName,,
|
|
| 45 |
ScientificName,binomial,,
|
|
| 46 | 46 |
Kingdom,kingdom,, |
| 47 | 47 |
Phylum,phylum,, |
| 48 | 48 |
Class,class,, |
| inputs/GBIF/Specimen/map.csv | ||
|---|---|---|
| 9 | 9 |
CatalogNO,catalogNumber,, |
| 10 | 10 |
LastDateModified,dcterms:modified,, |
| 11 | 11 |
IdentifiedBy,identifiedBy,, |
| 12 |
ScientificNameOriginal,originalScientificName,,
|
|
| 12 |
ScientificNameOriginal,originalBinomial,,
|
|
| 13 | 13 |
AuthorOfScientificName,scientificNameAuthorship,, |
| 14 |
ScientificName,scientificName,,
|
|
| 14 |
ScientificName,binomial,,
|
|
| 15 | 15 |
GBIFFamilyOriginal,originalFamily,, |
| 16 | 16 |
Family,family,, |
| 17 | 17 |
GBIFGenusOriginal,originalGenus,, |
| inputs/GBIF/Specimen/new_terms.csv | ||
|---|---|---|
| 3 | 3 |
CollectionCD,collectionCode,, |
| 4 | 4 |
CatalogNO,catalogNumber,, |
| 5 | 5 |
LastDateModified,dcterms:modified,, |
| 6 |
ScientificNameOriginal,originalScientificName,,
|
|
| 6 |
ScientificNameOriginal,originalBinomial,,
|
|
| 7 | 7 |
AuthorOfScientificName,scientificNameAuthorship,, |
| 8 | 8 |
GBIFFamilyOriginal,originalFamily,, |
| 9 | 9 |
GBIFGenusOriginal,originalGenus,, |
| inputs/NCU-NCSC/Specimen/map.csv | ||
|---|---|---|
| 2 | 2 |
Accession Number,occurrenceID,, |
| 3 | 3 |
SeriesName,collectionCode,, |
| 4 | 4 |
Barcode,catalogNumber,, |
| 5 |
Full Taxon Name,scientificName,,
|
|
| 5 |
Full Taxon Name,binomial,,
|
|
| 6 | 6 |
Collect Date,dateCollected,, |
| 7 | 7 |
Country,country,, |
| 8 | 8 |
State,stateProvince,, |
| inputs/NCU-NCSC/Specimen/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
Accession Number,occurrenceID,, |
| 2 | 2 |
SeriesName,collectionCode,, |
| 3 | 3 |
Barcode,catalogNumber,, |
| 4 |
Full Taxon Name,scientificName,,
|
|
| 4 |
Full Taxon Name,binomial,,
|
|
| 5 | 5 |
Collect Date,dateCollected,, |
| 6 | 6 |
Lat (-=S),decimalLatitude,"/_replace:[""\?$""=]/value", |
| 7 | 7 |
Long (-=W),decimalLongitude,"/_replace:[""\?$""=]/value", |
| inputs/SpeciesLink/Specimen/map.csv | ||
|---|---|---|
| 6 | 6 |
dwc_dwcore_CollectionCode,collectionCode,, |
| 7 | 7 |
dwc_dwcore_CatalogNumber,catalogNumber,, |
| 8 | 8 |
dwc_dwcore_Remarks,taxonRemarks,, |
| 9 |
dwc_dwcore_ScientificName,scientificName,,
|
|
| 9 |
dwc_dwcore_ScientificName,binomial,,
|
|
| 10 | 10 |
dwc_dwcore_Kingdom,kingdom,, |
| 11 | 11 |
dwc_dwcore_Phylum,phylum,, |
| 12 | 12 |
dwc_dwcore_Class,class,, |
| ... | ... | |
| 82 | 82 |
dwc_terms_decimalLatitude,decimalLatitude,, |
| 83 | 83 |
dwc_terms_decimalLongitude,decimalLongitude,, |
| 84 | 84 |
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,, |
| 85 |
dwc_terms_scientificName,scientificName,,
|
|
| 85 |
dwc_terms_scientificName,binomial,,
|
|
| 86 | 86 |
dwc_terms_kingdom,kingdom,, |
| 87 | 87 |
dwc_terms_phylum,phylum,, |
| 88 | 88 |
dwc_terms_class,class,, |
| ... | ... | |
| 96 | 96 |
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,, |
| 97 | 97 |
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,, |
| 98 | 98 |
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,, |
| 99 |
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
|
|
| 99 |
conceptual_darwin_2003_1_0_ScientificName,binomial,,
|
|
| 100 | 100 |
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,, |
| 101 | 101 |
conceptual_darwin_2003_1_0_Kingdom,kingdom,, |
| 102 | 102 |
conceptual_darwin_2003_1_0_Phylum,phylum,, |
| inputs/SpeciesLink/Specimen/new_terms.csv | ||
|---|---|---|
| 5 | 5 |
dwc_dwcore_CollectionCode,collectionCode,, |
| 6 | 6 |
dwc_dwcore_CatalogNumber,catalogNumber,, |
| 7 | 7 |
dwc_dwcore_Remarks,taxonRemarks,, |
| 8 |
dwc_dwcore_ScientificName,scientificName,,
|
|
| 8 |
dwc_dwcore_ScientificName,binomial,,
|
|
| 9 | 9 |
dwc_dwcore_Kingdom,kingdom,, |
| 10 | 10 |
dwc_dwcore_Phylum,phylum,, |
| 11 | 11 |
dwc_dwcore_Class,class,, |
| ... | ... | |
| 81 | 81 |
dwc_terms_decimalLatitude,decimalLatitude,, |
| 82 | 82 |
dwc_terms_decimalLongitude,decimalLongitude,, |
| 83 | 83 |
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,, |
| 84 |
dwc_terms_scientificName,scientificName,,
|
|
| 84 |
dwc_terms_scientificName,binomial,,
|
|
| 85 | 85 |
dwc_terms_kingdom,kingdom,, |
| 86 | 86 |
dwc_terms_phylum,phylum,, |
| 87 | 87 |
dwc_terms_class,class,, |
| ... | ... | |
| 95 | 95 |
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,, |
| 96 | 96 |
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,, |
| 97 | 97 |
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,, |
| 98 |
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
|
|
| 98 |
conceptual_darwin_2003_1_0_ScientificName,binomial,,
|
|
| 99 | 99 |
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,, |
| 100 | 100 |
conceptual_darwin_2003_1_0_Kingdom,kingdom,, |
| 101 | 101 |
conceptual_darwin_2003_1_0_Phylum,phylum,, |
| inputs/MO/Specimen/map.csv | ||
|---|---|---|
| 3 | 3 |
DateLastModified,dcterms:modified,, |
| 4 | 4 |
InstitutionCode,institutionCode,, |
| 5 | 5 |
CollectionCode,collectionCode,, |
| 6 |
ScientificName,scientificName,,
|
|
| 6 |
ScientificName,binomial,,
|
|
| 7 | 7 |
BasisOfRecord,basisOfRecord,, |
| 8 | 8 |
Kingdom,kingdom,, |
| 9 | 9 |
family,family,, |
| inputs/VegBank/taxonobservation_/map.csv | ||
|---|---|---|
| 2 | 2 |
plantconcept_id,*plantconcept_id,, |
| 3 | 3 |
taxonobservation_id,taxonOccurrenceID,, |
| 4 | 4 |
observation_id,eventID,, |
| 5 |
authorplantname,originalScientificName,,
|
|
| 5 |
authorplantname,originalBinomial,,
|
|
| 6 | 6 |
taxonobservation_reference_id,*taxonobservation_reference_id,, |
| 7 | 7 |
taxoninferencearea,*taxoninferencearea,, |
| 8 | 8 |
emb_taxonobservation,*emb_taxonobservation,, |
| inputs/VegBank/taxonobservation_/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
taxonobservation_id,taxonOccurrenceID,, |
| 2 | 2 |
observation_id,eventID,, |
| 3 |
authorplantname,originalScientificName,,
|
|
| 3 |
authorplantname,originalBinomial,,
|
|
| 4 | 4 |
museumaccessionnumber,catalogNumber,, |
| 5 | 5 |
interpretationdate,dateIdentified,, |
| 6 | 6 |
collectiondate,dateCollected,, |
| inputs/QMOR/Specimen/map.csv | ||
|---|---|---|
| 60 | 60 |
order,order,, |
| 61 | 61 |
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,, |
| 62 | 62 |
basisOfRecord,basisOfRecord,, |
| 63 |
scientificName,scientificName,,
|
|
| 63 |
scientificName,binomial,,
|
|
| 64 | 64 |
maximumElevationInMeters,maximumElevationInMeters,, |
| 65 | 65 |
dateIdentified,dateIdentified,, |
| 66 | 66 |
individualCount,individualCount,, |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 116 | 116 |
plotName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 117 | 117 |
recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1", |
| 118 | 118 |
tag,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 119 |
originalScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/1",
|
|
| 119 |
originalBinomial,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/1",
|
|
| 120 | 120 |
scientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
| 121 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
|
| 121 |
binomial,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
|
| 122 | 122 |
growthForm,/location/locationevent/taxonoccurrence/growthform, |
| 123 | 123 |
verbatimGrowthForm,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 124 | 124 |
cultivated,/location/locationevent/taxonoccurrence/iscultivated/_alt/1, |
| ... | ... | |
| 135 | 135 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/cond/_exists", |
| 136 | 136 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/2",
|
| 137 | 137 |
scientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/1",
|
| 138 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 138 |
binomial,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 139 | 139 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
| 140 | 140 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
| 141 | 141 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has explicit parent""]/else/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]}/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
| ... | ... | |
| 152 | 152 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/family, |
| 153 | 153 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/genus, |
| 154 | 154 |
acceptedScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/1, |
| 155 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 155 |
acceptedBinomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 156 | 156 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| 157 | 157 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
| 158 | 158 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3, |
| ... | ... | |
| 181 | 181 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/verbatimrank, |
| 182 | 182 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/rank, |
| 183 | 183 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/species, |
| 184 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname,
|
|
| 184 |
acceptedBinomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname,
|
|
| 185 | 185 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/verbatimrank, |
| 186 | 186 |
parentScientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| 187 | 187 |
parentTaxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| ... | ... | |
| 227 | 227 |
verbatimScientificNameWithAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 228 | 228 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 229 | 229 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/species, |
| 230 |
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname,
|
|
| 230 |
verbatimBinomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname,
|
|
| 231 | 231 |
verbatimTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/verbatimrank, |
| 232 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 232 |
binomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
|
|
| 233 | 233 |
scientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicnamewithauthor, |
| 234 | 234 |
taxonomicStatus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonstatus, |
| 235 | 235 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/verbatimrank, |
| ... | ... | |
| 243 | 243 |
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/family, |
| 244 | 244 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/genus, |
| 245 | 245 |
originalScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/1, |
| 246 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 246 |
originalBinomial,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 247 | 247 |
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| 248 | 248 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
| 249 | 249 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3, |
| ... | ... | |
| 271 | 271 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/verbatimrank, |
| 272 | 272 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/rank, |
| 273 | 273 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/species, |
| 274 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname,
|
|
| 274 |
originalBinomial,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname,
|
|
| 275 | 275 |
originalScientificNameWithAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicnamewithauthor, |
| 276 | 276 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/verbatimrank, |
| 277 | 277 |
originalIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 116 | 116 |
plotName,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 117 | 117 |
recordNumber,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then", |
| 118 | 118 |
tag,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then", |
| 119 |
originalScientificName,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then",
|
|
| 119 |
originalBinomial,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then",
|
|
| 120 | 120 |
scientificNameWithAuthorship,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then", |
| 121 |
scientificName,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then",
|
|
| 121 |
binomial,"//taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then",
|
|
| 122 | 122 |
growthForm,//taxonoccurrence/growthform, |
| 123 | 123 |
verbatimGrowthForm,//taxonoccurrence/growthform,"According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>" |
| 124 | 124 |
cultivated,//taxonoccurrence/iscultivated, |
| ... | ... | |
| 135 | 135 |
verbatimScientificNameWithAuthorship,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists", |
| 136 | 136 |
morphospecies,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
| 137 | 137 |
scientificNameWithAuthorship,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
| 138 |
scientificName,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
|
| 138 |
binomial,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
|
| 139 | 139 |
family,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
| 140 | 140 |
genus,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
| 141 | 141 |
specificEpithet,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/{then/.,else/matched_label_id/taxonlabel}/identifyingtaxonomicname",
|
| ... | ... | |
| 152 | 152 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/family, |
| 153 | 153 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/genus, |
| 154 | 154 |
acceptedScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/identifyingtaxonomicname, |
| 155 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/identifyingtaxonomicname,
|
|
| 155 |
acceptedBinomial,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/identifyingtaxonomicname,
|
|
| 156 | 156 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/identifyingtaxonomicname, |
| 157 | 157 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/identifyingtaxonomicname, |
| 158 | 158 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/identifyingtaxonomicname, |
| ... | ... | |
| 181 | 181 |
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/verbatimrank, |
| 182 | 182 |
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/rank, |
| 183 | 183 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/species, |
| 184 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/taxonomicname,
|
|
| 184 |
acceptedBinomial,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/taxonomicname,
|
|
| 185 | 185 |
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/verbatimrank, |
| 186 | 186 |
parentScientificNameID,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/sourceaccessioncode, |
| 187 | 187 |
parentTaxonConceptID,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/sourceaccessioncode, |
| ... | ... | |
| 227 | 227 |
verbatimScientificNameWithAuthorship,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 228 | 228 |
morphospecies,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 229 | 229 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/species, |
| 230 |
verbatimScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/taxonomicname,
|
|
| 230 |
verbatimBinomial,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/taxonomicname,
|
|
| 231 | 231 |
verbatimTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/verbatimrank, |
| 232 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonomicname,
|
|
| 232 |
binomial,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonomicname,
|
|
| 233 | 233 |
scientificNameWithAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonomicnamewithauthor, |
| 234 | 234 |
taxonomicStatus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonstatus, |
| 235 | 235 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/verbatimrank, |
| ... | ... | |
| 243 | 243 |
originalFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/family, |
| 244 | 244 |
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/genus, |
| 245 | 245 |
originalScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel/identifyingtaxonomicname, |
| 246 |
originalScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel/identifyingtaxonomicname,
|
|
| 246 |
originalBinomial,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel/identifyingtaxonomicname,
|
|
| 247 | 247 |
originalFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel/identifyingtaxonomicname, |
| 248 | 248 |
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel/identifyingtaxonomicname, |
| 249 | 249 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel/identifyingtaxonomicname, |
| ... | ... | |
| 271 | 271 |
originalTaxonRank,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/verbatimrank, |
| 272 | 272 |
originalTaxonRank,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/rank, |
| 273 | 273 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/species, |
| 274 |
originalScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname,
|
|
| 274 |
originalBinomial,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname,
|
|
| 275 | 275 |
originalScientificNameWithAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicnamewithauthor, |
| 276 | 276 |
originalTaxonRank,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/verbatimrank, |
| 277 | 277 |
originalIdentificationQualifier,//taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit, |
Also available in: Unified diff
mappings: Renamed *scientificName to *binomial because DwC defines the scientificName as "The full scientific name, with authorship and date information if known", but many datasources do not include the author in their scientific name, and the fields scientificName is mapped to in VegBIEN assume it does not include the author