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Revision 5646

mappings/VegCore-VegBIEN.csv: Also create the identifyingtaxonomicname on the verbatim taxonlabel supplied by the datasource, in addition to on the TNRS input taxonlabel that the verbatim taxonlabel is matched up with

View differences:

inputs/CTFS/StemObservation/VegBIEN.csv
26 26
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
27 27
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
28 28
SpeciesAuthority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
29
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
30
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
31
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
32
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
33
SpeciesAuthority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
34 29
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
35 30
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
36 31
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
32
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
33
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
34
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
35
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
36
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
37 37
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
38 38
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
39 39
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
inputs/CTFS/TaxonOccurrence/VegBIEN.csv
13 13
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
14 14
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
15 15
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
16
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
17
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
18
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
19
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
20 16
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
21 17
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
18
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
19
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
20
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
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SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
22 22
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
23 23
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
24 24
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
inputs/FIA/Organism/VegBIEN.csv
18 18
TreeTag,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2",
19 19
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
20 20
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
21
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
22
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
23 21
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
22
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
23
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
24 24
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
25 25
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
26 26
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/species,
inputs/SALVIAS/plotObservations/VegBIEN.csv
64 64
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
65 65
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
66 66
auth,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName.
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Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
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Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
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Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
70
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
71
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
72
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
73
auth,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName.
74 67
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,Brad: This is the author of the scientificName.
75 68
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
76 69
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
70
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
71
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
72
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
73
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
74
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
75
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
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auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,Brad: This is the author of the scientificName.
77 77
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
78 78
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
79 79
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
inputs/.TNRS/tnrs/VegBIEN.csv
10 10
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
11 11
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
12 12
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
13
Name_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
14
Name_matched_accepted_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",Contains family based on matched name
15
Genus_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
16
Specific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
17
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
18
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
19
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
20
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",Contains author based on matched name
21 13
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/author,
22 14
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/binomial,
23 15
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/family,
......
35 27
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
36 28
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,Contains family based on matched name
37 29
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
30
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
31
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Contains family based on matched name
32
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
33
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
34
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
35
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
36
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
37
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,Contains author based on matched name
38 38
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
39 39
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/else",
40 40
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
......
55 55
Genus_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2,
56 56
Specific_epithet_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3,
57 57
Overall_score,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,Assuming is a fraction based on the range of values
58
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies,
58 59
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
59
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/then",
60 60
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/species,
61 61
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/verbatimrank,
62 62
Taxonomic_status,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonstatus,
inputs/U/Specimen/test.xml.ref
103 103
                                    </creator_id>
104 104
                                    <family>$Family</family>
105 105
                                    <genus>$Genus</genus>
106
                                    <identifyingtaxonomicname>
107
                                        <_join_words>
108
                                            <1>$Family</1>
109
                                            <2>$Genus</2>
110
                                        </_join_words>
111
                                    </identifyingtaxonomicname>
106 112
                                    <parent_id>
107 113
                                        <taxonlabel>
108 114
                                            <parent_id>
......
198 204
        </path>
199 205
    </_simplifyPath>
200 206
</VegBIEN>
201
Inserted 29 new rows into database
207
Inserted 30 new rows into database
inputs/GBIF/Specimen/VegBIEN.csv
21 21
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
22 22
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
23 23
AuthorOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
24
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
25
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
26
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
27
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
28
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
29
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
30
AuthorOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
31 24
AuthorOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
32 25
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
33 26
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
34 27
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
35 28
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
29
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
30
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
31
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
32
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
33
InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
34
InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
35
AuthorOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
36 36
SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
37 37
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
38 38
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
inputs/MT/Specimen/VegBIEN.csv
13 13
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
14 14
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
15 15
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
16
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
17
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
18 16
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
19 17
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
18
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
19
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
20 20
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
21 21
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
22 22
locality,/location/locationnarrative/_merge/1,
inputs/MT/Specimen/test.xml.ref
60 60
                                    </matched_label_id>
61 61
                                    <family>$family</family>
62 62
                                    <genus>$genus</genus>
63
                                    <identifyingtaxonomicname>
64
                                        <_join_words>
65
                                            <1>$family</1>
66
                                            <2>$genus</2>
67
                                        </_join_words>
68
                                    </identifyingtaxonomicname>
63 69
                                    <parent_id>
64 70
                                        <taxonlabel>
65 71
                                            <parent_id>
......
112 118
        </path>
113 119
    </_simplifyPath>
114 120
</VegBIEN>
115
Inserted 23 new rows into database
121
Inserted 24 new rows into database
inputs/test_taxonomic_names/Taxon/VegBIEN.csv
1 1
test_taxonomic_names,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
3 3
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
4
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
5 4
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
5
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
6 6
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode,
inputs/test_taxonomic_names/Taxon/test.xml.ref
21 21
                                        </taxonlabel>
22 22
                                    </matched_label_id>
23 23
                                    <binomial>$scientificName</binomial>
24
                                    <identifyingtaxonomicname>$scientificName</identifyingtaxonomicname>
24 25
                                    <sourceaccessioncode>$scientificNameID</sourceaccessioncode>
25 26
                                </taxonlabel>
26 27
                            </taxonlabel_id>
inputs/XAL/Specimen/VegBIEN.csv
27 27
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
28 28
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
29 29
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
30
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
31
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
32
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
33
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
34
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
35
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
36 30
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
37 31
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
38 32
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
......
41 35
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
42 36
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
43 37
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
38
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
39
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
40
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
41
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
42
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
43
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
44 44
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
45 45
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
46 46
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
inputs/TEAM/VL/VegBIEN.csv
23 23
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
24 24
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
25 25
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
26
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
27
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
28
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
29 26
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
30 27
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
28
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
29
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
30
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
31 31
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
32 32
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
33 33
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
inputs/TEAM/VL/test.xml.ref
63 63
                                    </matched_label_id>
64 64
                                    <family>$Family</family>
65 65
                                    <genus>$Genus</genus>
66
                                    <identifyingtaxonomicname>
67
                                        <_join_words>
68
                                            <1>$Family</1>
69
                                            <2>$Genus</2>
70
                                            <3>$Species</3>
71
                                        </_join_words>
72
                                    </identifyingtaxonomicname>
66 73
                                    <parent_id>
67 74
                                        <taxonlabel>
68 75
                                            <parent_id>
......
116 123
        </path>
117 124
    </_simplifyPath>
118 125
</VegBIEN>
119
Inserted 30 new rows into database
126
Inserted 32 new rows into database
inputs/TEAM/VT/VegBIEN.csv
23 23
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
24 24
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
25 25
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
26
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
27
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
28
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
29 26
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
30 27
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
28
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
29
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
30
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
31 31
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
32 32
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
33 33
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
inputs/TEAM/VT/test.xml.ref
63 63
                                    </matched_label_id>
64 64
                                    <family>$Family</family>
65 65
                                    <genus>$Genus</genus>
66
                                    <identifyingtaxonomicname>
67
                                        <_join_words>
68
                                            <1>$Family</1>
69
                                            <2>$Genus</2>
70
                                            <3>$Species</3>
71
                                        </_join_words>
72
                                    </identifyingtaxonomicname>
66 73
                                    <parent_id>
67 74
                                        <taxonlabel>
68 75
                                            <parent_id>
......
116 123
        </path>
117 124
    </_simplifyPath>
118 125
</VegBIEN>
119
Inserted 27 new rows into database
126
Inserted 29 new rows into database
inputs/NY/Specimen/VegBIEN.csv
32 32
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
33 33
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
34 34
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
35
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
36
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
37
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
38
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
39
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
40
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
41 35
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
42 36
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
43 37
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
......
46 40
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
47 41
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
48 42
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
43
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
44
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
45
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
46
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
47
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
48
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
49 49
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
50 50
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
51 51
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
inputs/NY/Specimen/test.xml.ref
172 172
                                    </creator_id>
173 173
                                    <family>$Family</family>
174 174
                                    <genus>$Genus</genus>
175
                                    <identifyingtaxonomicname>
176
                                        <_join_words>
177
                                            <1>
178
                                                <_alt>
179
                                                    <1>$ScientificName</1>
180
                                                    <2>
181
                                                        <_join_words>
182
                                                            <1>$Family</1>
183
                                                            <2>$Genus</2>
184
                                                            <3>$Species</3>
185
                                                            <4>$Subspecies</4>
186
                                                        </_join_words>
187
                                                    </2>
188
                                                </_alt>
189
                                            </1>
190
                                            <2>$ScientificNameAuthor</2>
191
                                        </_join_words>
192
                                    </identifyingtaxonomicname>
175 193
                                    <parent_id>
176 194
                                        <taxonlabel>
177 195
                                            <parent_id>
inputs/Madidi/Organism/VegBIEN.csv
36 36
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
37 37
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
38 38
Autor (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
39
Specie+autor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/1",
40
Species and morphotypes,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1","Contains less than ""Specie+autor"""
41
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
42
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
43
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
44
Autor (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
45 39
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
46 40
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,"Contains less than ""Specie+autor"""
47 41
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
48 42
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
49 43
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
44
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/1,
45
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,"Contains less than ""Specie+autor"""
46
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
47
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
48
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
49
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
50 50
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
51 51
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
52 52
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
inputs/Madidi/Organism/test.xml.ref
106 106
                                    </creator_id>
107 107
                                    <family>$Family (revised)</family>
108 108
                                    <genus>$Genera</genus>
109
                                    <identifyingtaxonomicname>
110
                                        <_alt>
111
                                            <1>$Specie+autor</1>
112
                                            <2>
113
                                                <_join_words>
114
                                                    <1>
115
                                                        <_alt>
116
                                                            <1>$Species and morphotypes</1>
117
                                                            <2>
118
                                                                <_join_words>
119
                                                                    <1>$Family (revised)</1>
120
                                                                    <2>$Genera</2>
121
                                                                    <3>$Specific epithet</3>
122
                                                                </_join_words>
123
                                                            </2>
124
                                                        </_alt>
125
                                                    </1>
126
                                                    <2>$Autor (revised)</2>
127
                                                </_join_words>
128
                                            </2>
129
                                        </_alt>
130
                                    </identifyingtaxonomicname>
109 131
                                    <parent_id>
110 132
                                        <taxonlabel>
111 133
                                            <parent_id>
inputs/UNCC/Specimen/VegBIEN.csv
51 51
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2",
52 52
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
53 53
authors,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
54
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
55
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
56
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
57
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
58
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
59
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1",
60
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2",
61
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
62
authors,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
63 54
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
64 55
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
65 56
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
66 57
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
58
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
59
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
60
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
61
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
62
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
63
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1",
64
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2",
65
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
66
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
67 67
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/1",
68 68
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/2",
69 69
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank/_alt/1",
inputs/UNCC/Specimen/test.xml.ref
119 119
                                    <binomial>$SciName</binomial>
120 120
                                    <family>$family</family>
121 121
                                    <genus>$genus</genus>
122
                                    <identifyingtaxonomicname>
123
                                        <_join_words>
124
                                            <1>
125
                                                <_alt>
126
                                                    <1>$SciName</1>
127
                                                    <2>
128
                                                        <_join_words>
129
                                                            <1>$family</1>
130
                                                            <2>$genus</2>
131
                                                            <3>$species</3>
132
                                                            <5>
133
                                                                <_join_words>
134
                                                                    <1>
135
                                                                        <_if name="if has infraspecificEpithet">
136
                                                                            <cond>$infraname</cond>
137
                                                                            <then>
138
                                                                                <_alt>
139
                                                                                    <1>$usdaRank</1>
140
                                                                                    <2>$infrarank</2>
141
                                                                                </_alt>
142
                                                                            </then>
143
                                                                        </_if>
144
                                                                    </1>
145
                                                                    <2>$infraname</2>
146
                                                                </_join_words>
147
                                                            </5>
148
                                                        </_join_words>
149
                                                    </2>
150
                                                </_alt>
151
                                            </1>
152
                                            <2>$authors</2>
153
                                        </_join_words>
154
                                    </identifyingtaxonomicname>
122 155
                                    <parent_id>
123 156
                                        <taxonlabel>
124 157
                                            <rank>
......
224 257
        </path>
225 258
    </_simplifyPath>
226 259
</VegBIEN>
227
Inserted 22 new rows into database
260
Inserted 23 new rows into database
inputs/ACAD/Specimen/VegBIEN.csv
28 28
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
29 29
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
30 30
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
31
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/1",
32
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
33
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
34
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
35
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
36
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
37
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
38
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
39 31
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
40 32
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
41 33
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
42 34
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
43 35
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
36
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/1,
37
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
38
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
39
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
40
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
41
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
42
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
43
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
44 44
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
45 45
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
46 46
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
inputs/ACAD/Specimen/test.xml.ref
117 117
                                    </creator_id>
118 118
                                    <family>$family</family>
119 119
                                    <genus>$genus</genus>
120
                                    <identifyingtaxonomicname>
121
                                        <_alt>
122
                                            <1>$scientificName</1>
123
                                            <2>
124
                                                <_join_words>
125
                                                    <1>
126
                                                        <_join_words>
127
                                                            <1>$family</1>
128
                                                            <2>$genus</2>
129
                                                            <3>$specificEpithet</3>
130
                                                            <5>
131
                                                                <_join_words>
132
                                                                    <1>
133
                                                                        <_if name="if has infraspecificEpithet">
134
                                                                            <cond>$infraspecificEpithet</cond>
135
                                                                            <then>$taxonRank</then>
136
                                                                        </_if>
137
                                                                    </1>
138
                                                                    <2>$infraspecificEpithet</2>
139
                                                                </_join_words>
140
                                                            </5>
141
                                                        </_join_words>
142
                                                    </1>
143
                                                    <2>$scientificNameAuthorship</2>
144
                                                </_join_words>
145
                                            </2>
146
                                        </_alt>
147
                                    </identifyingtaxonomicname>
120 148
                                    <parent_id>
121 149
                                        <taxonlabel>
122 150
                                            <rank>$taxonRank</rank>
inputs/.NCBI/higher_taxa/VegBIEN.csv
1 1
NCBI,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 2
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
3 3
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6",
4
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
5
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6",
6 4
parent tax_id,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode,
5
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
6
name_txt,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6,
7 7
parent tax_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
8 8
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
9 9
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
inputs/.NCBI/higher_taxa/test.xml.ref
21 21
                                        </taxonlabel>
22 22
                                    </matched_label_id>
23 23
                                    <_taxonlabel_set_parent_id><parent_id><taxonlabel><sourceaccessioncode>$parent tax_id</sourceaccessioncode></taxonlabel></parent_id></_taxonlabel_set_parent_id>
24
                                    <identifyingtaxonomicname>$name_txt</identifyingtaxonomicname>
24 25
                                    <rank>$rank</rank>
25 26
                                    <sourceaccessioncode>$tax_id</sourceaccessioncode>
26 27
                                    <taxonepithet>$name_txt</taxonepithet>
inputs/SALVIAS-CSV/Organism/VegBIEN.csv
71 71
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
72 72
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
73 73
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName.
74
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
75
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
76
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
77
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
78
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
79
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
80
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName.
81 74
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,Brad: This is the author of the scientificName.
82 75
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
83 76
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
77
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
78
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
79
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
80
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
81
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
82
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
83
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,Brad: This is the author of the scientificName.
84 84
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
85 85
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/verbatimrank",
86 86
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
inputs/SALVIAS-CSV/Organism/test.xml.ref
183 183
                                    <author>$specific_authority</author>
184 184
                                    <family>$family</family>
185 185
                                    <genus>$genus</genus>
186
                                    <identifyingtaxonomicname>
187
                                        <_join_words>
188
                                            <1>
189
                                                <_join_words>
190
                                                    <1>$family</1>
191
                                                    <2>$genus</2>
192
                                                    <3>$specific_epithet</3>
193
                                                    <5>
194
                                                        <_join_words>
195
                                                            <1>
196
                                                                <_if name="if has infraspecificEpithet">
197
                                                                    <cond>$infra_ep_1</cond>
198
                                                                    <then>$infra_rank_1</then>
199
                                                                </_if>
200
                                                            </1>
201
                                                            <2>$infra_ep_1</2>
202
                                                        </_join_words>
203
                                                    </5>
204
                                                </_join_words>
205
                                            </1>
206
                                            <2>$specific_authority</2>
207
                                        </_join_words>
208
                                    </identifyingtaxonomicname>
186 209
                                    <parent_id>
187 210
                                        <taxonlabel>
188 211
                                            <rank>$infra_rank_1</rank>
......
335 358
        </path>
336 359
    </_simplifyPath>
337 360
</VegBIEN>
338
Inserted 46 new rows into database
361
Inserted 48 new rows into database
inputs/CVS/Organism/VegBIEN.csv
11 11
authorObsCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
12 12
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
13 13
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
14
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
15 14
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
15
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
16 16
county,/location/locationplace/*_id/placepath/county,
17 17
state,/location/locationplace/*_id/placepath/stateprovince,
18 18
confidentialityStatus,,** No join mapping for *confidentialityStatus ** 
inputs/CVS/Organism/test.xml.ref
43 43
                                        </taxonlabel>
44 44
                                    </matched_label_id>
45 45
                                    <binomial>$currentTaxonName sec Weakley 2006</binomial>
46
                                    <identifyingtaxonomicname>$currentTaxonName sec Weakley 2006</identifyingtaxonomicname>
46 47
                                </taxonlabel>
47 48
                            </taxonlabel_id>
48 49
                        </taxondetermination>
inputs/REMIB/Specimen/VegBIEN.csv
36 36
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
37 37
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
38 38
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
39
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
40
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
41
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
42 39
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
43 40
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
41
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
42
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
43
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
44 44
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
45 45
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
46 46
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
inputs/REMIB/Specimen/test.xml.ref
83 83
                                    </matched_label_id>
84 84
                                    <family>$family</family>
85 85
                                    <genus>$genus</genus>
86
                                    <identifyingtaxonomicname>
87
                                        <_join_words>
88
                                            <1>$family</1>
89
                                            <2>$genus</2>
90
                                            <3>$specificEpithet</3>
91
                                        </_join_words>
92
                                    </identifyingtaxonomicname>
86 93
                                    <parent_id>
87 94
                                        <taxonlabel>
88 95
                                            <parent_id>
......
156 163
        </path>
157 164
    </_simplifyPath>
158 165
</VegBIEN>
159
Inserted 25 new rows into database
166
Inserted 26 new rows into database
inputs/CTFS/StemObservation/test.xml.ref
67 67
                                    <author>$SpeciesAuthority</author>
68 68
                                    <family>$Family</family>
69 69
                                    <genus>$Genus</genus>
70
                                    <identifyingtaxonomicname>
71
                                        <_join_words>
72
                                            <1>
73
                                                <_join_words>
74
                                                    <1>$Family</1>
75
                                                    <2>$Genus</2>
76
                                                    <3>$SpeciesName</3>
77
                                                    <4>$SubSpeciesName</4>
78
                                                </_join_words>
79
                                            </1>
80
                                            <2>$SpeciesAuthority</2>
81
                                        </_join_words>
82
                                    </identifyingtaxonomicname>
70 83
                                    <parent_id>
71 84
                                        <taxonlabel>
72 85
                                            <parent_id>
inputs/CTFS/TaxonOccurrence/test.xml.ref
32 32
                                    </matched_label_id>
33 33
                                    <family>$Family</family>
34 34
                                    <genus>$Genus</genus>
35
                                    <identifyingtaxonomicname>
36
                                        <_join_words>
37
                                            <1>$Family</1>
38
                                            <2>$Genus</2>
39
                                            <3>$SpeciesName</3>
40
                                            <4>$SubSpeciesName</4>
41
                                        </_join_words>
42
                                    </identifyingtaxonomicname>
35 43
                                    <parent_id>
36 44
                                        <taxonlabel>
37 45
                                            <parent_id>
......
85 93
        </path>
86 94
    </_simplifyPath>
87 95
</VegBIEN>
88
Inserted 16 new rows into database
96
Inserted 18 new rows into database
inputs/FIA/Organism/test.xml.ref
79 79
                                        </taxonlabel>
80 80
                                    </matched_label_id>
81 81
                                    <genus>$Genus</genus>
82
                                    <identifyingtaxonomicname>
83
                                        <_join_words>
84
                                            <2>$Genus</2>
85
                                            <3>$SpecificEpithet</3>
86
                                        </_join_words>
87
                                    </identifyingtaxonomicname>
82 88
                                    <parent_id>
83 89
                                        <taxonlabel>
84 90
                                            <parent_id>
......
133 139
        </path>
134 140
    </_simplifyPath>
135 141
</VegBIEN>
136
Inserted 23 new rows into database
142
Inserted 25 new rows into database
inputs/SALVIAS/plotObservations/test.xml.ref
154 154
                                    <author>$auth</author>
155 155
                                    <family>$Family</family>
156 156
                                    <genus>$Genus</genus>
157
                                    <identifyingtaxonomicname>
158
                                        <_join_words>
159
                                            <1>
160
                                                <_join_words>
161
                                                    <1>$Family</1>
162
                                                    <2>$Genus</2>
163
                                                    <3>$Species</3>
164
                                                    <5>
165
                                                        <_join_words>
166
                                                            <1>
167
                                                                <_if name="if has infraspecificEpithet">
168
                                                                    <cond>$infra_ep_1</cond>
169
                                                                    <then>$infra_rank_1</then>
170
                                                                </_if>
171
                                                            </1>
172
                                                            <2>$infra_ep_1</2>
173
                                                        </_join_words>
174
                                                    </5>
175
                                                </_join_words>
176
                                            </1>
177
                                            <2>$auth</2>
178
                                        </_join_words>
179
                                    </identifyingtaxonomicname>
157 180
                                    <parent_id>
158 181
                                        <taxonlabel>
159 182
                                            <rank>$infra_rank_1</rank>
inputs/U/Specimen/VegBIEN.csv
16 16
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
17 17
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
18 18
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
19
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
20
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
21 19
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
22 20
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
23 21
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
24 22
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
23
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
24
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
25 25
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
26 26
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
27 27
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
inputs/ARIZ/Specimen/test.xml.ref
171 171
                                    </creator_id>
172 172
                                    <family>$Family</family>
173 173
                                    <genus>$Genus</genus>
174
                                    <identifyingtaxonomicname>
175
                                        <_alt>
176
                                            <1>$ScientificNameAuthor</1>
177
                                            <2>
178
                                                <_alt>
179
                                                    <1>$ScientificName</1>
180
                                                    <2>
181
                                                        <_join_words>
182
                                                            <1>$Family</1>
183
                                                            <2>$Genus</2>
184
                                                            <3>$Species</3>
185
                                                            <4>$Subspecies</4>
186
                                                        </_join_words>
187
                                                    </2>
188
                                                </_alt>
189
                                            </2>
190
                                        </_alt>
191
                                    </identifyingtaxonomicname>
174 192
                                    <parent_id>
175 193
                                        <taxonlabel>
176 194
                                            <parent_id>
inputs/NCU-NCSC/Specimen/VegBIEN.csv
15 15
Cultivated?,/location/locationevent/taxonoccurrence/iscultivated/_alt/1,
16 16
Accession Number,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
17 17
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
18
Full Taxon Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
19 18
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
19
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
20 20
Barcode,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
21 21
Country,/location/locationplace/*_id/placepath/country,
22 22
County,/location/locationplace/*_id/placepath/county,
inputs/.TNRS/tnrs/test.xml.ref
9 9
                        <taxondetermination>
10 10
                            <taxonlabel_id>
11 11
                                <taxonlabel>
12
                                    <identifyingtaxonomicname>
13
                                        <_join_words>
14
                                            <1>
15
                                                <_alt>
16
                                                    <1>$Name_matched</1>
17
                                                    <2>
18
                                                        <_join_words>
19
                                                            <1>$Name_matched_accepted_family</1>
20
                                                            <2>$Genus_matched</2>
21
                                                            <3>$Specific_epithet_matched</3>
22
                                                            <5>
23
                                                                <_join_words>
24
                                                                    <1>
25
                                                                        <_if name="if has infraspecificEpithet">
26
                                                                            <cond>$Infraspecific_epithet_matched</cond>
27
                                                                            <then>$Name_matched_rank</then>
28
                                                                        </_if>
29
                                                                    </1>
30
                                                                    <2>$Infraspecific_epithet_matched</2>
31
                                                                </_join_words>
32
                                                            </5>
33
                                                        </_join_words>
34
                                                    </2>
35
                                                </_alt>
36
                                            </1>
37
                                            <2>$Name_matched_author</2>
38
                                        </_join_words>
39
                                    </identifyingtaxonomicname>
40 12
                                    <_taxonlabel_set_matched_label_id>
41 13
                                        <matched_label_id>
42 14
                                            <taxonlabel>
......
117 89
                                    <binomial>$Name_matched</binomial>
118 90
                                    <family>$Name_matched_accepted_family</family>
119 91
                                    <genus>$Genus_matched</genus>
92
                                    <identifyingtaxonomicname>
93
                                        <_join_words>
94
                                            <1>
95
                                                <_alt>
96
                                                    <1>$Name_matched</1>
97
                                                    <2>
98
                                                        <_join_words>
99
                                                            <1>$Name_matched_accepted_family</1>
100
                                                            <2>$Genus_matched</2>
101
                                                            <3>$Specific_epithet_matched</3>
102
                                                            <5>
103
                                                                <_join_words>
104
                                                                    <1>
105
                                                                        <_if name="if has infraspecificEpithet">
106
                                                                            <cond>$Infraspecific_epithet_matched</cond>
107
                                                                            <then>$Name_matched_rank</then>
108
                                                                        </_if>
109
                                                                    </1>
110
                                                                    <2>$Infraspecific_epithet_matched</2>
111
                                                                </_join_words>
112
                                                            </5>
113
                                                        </_join_words>
114
                                                    </2>
115
                                                </_alt>
116
                                            </1>
117
                                            <2>$Name_matched_author</2>
118
                                        </_join_words>
119
                                    </identifyingtaxonomicname>
120 120
                                    <parent_id>
121 121
                                        <taxonlabel>
122 122
                                            <rank>$Name_matched_rank</rank>
inputs/ARIZ/Specimen/VegBIEN.csv
36 36
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
37 37
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
38 38
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
39
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/1",Contains the binomial in addition to the authority
40
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
41
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
42
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
43
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
44
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
45 39
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
46 40
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
47 41
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
......
49 43
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
50 44
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
51 45
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
46
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/1,Contains the binomial in addition to the authority
47
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
48
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
49
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
50
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
51
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
52 52
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
53 53
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
54 54
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
inputs/GBIF/Specimen/test.xml.ref
87 87
                                    </creator_id>
88 88
                                    <family>$Family</family>
89 89
                                    <genus>$Genus</genus>
90
                                    <identifyingtaxonomicname>
91
                                        <_join_words>
92
                                            <1>
93
                                                <_alt>
94
                                                    <1>$ScientificName</1>
95
                                                    <2>
96
                                                        <_join_words>
97
                                                            <1>$Family</1>
98
                                                            <2>$Genus</2>
99
                                                            <3>$SpecificEpithet</3>
100
                                                            <5>$InfraspecificEpithet</5>
101
                                                        </_join_words>
102
                                                    </2>
103
                                                </_alt>
104
                                            </1>
105
                                            <2>$AuthorOfScientificName</2>
106
                                        </_join_words>
107
                                    </identifyingtaxonomicname>
90 108
                                    <parent_id>
91 109
                                        <taxonlabel>
92 110
                                            <parent_id>
inputs/NCU-NCSC/Specimen/test.xml.ref
78 78
                                        </taxonlabel>
79 79
                                    </matched_label_id>
80 80
                                    <binomial>$Full Taxon Name</binomial>
81
                                    <identifyingtaxonomicname>$Full Taxon Name</identifyingtaxonomicname>
81 82
                                </taxonlabel>
82 83
                            </taxonlabel_id>
83 84
                        </taxondetermination>
inputs/MO/Specimen/test.xml.ref
119 119
                                    </creator_id>
120 120
                                    <family>$family</family>
121 121
                                    <genus>$genus</genus>
122
                                    <identifyingtaxonomicname>
123
                                        <_join_words>
124
                                            <1>
125
                                                <_alt>
126
                                                    <1>$ScientificName</1>
127
                                                    <2>
128
                                                        <_join_words>
129
                                                            <1>$family</1>
130
                                                            <2>$genus</2>
131
                                                            <3>$species</3>
132
                                                            <4>$Subspecies</4>
133
                                                        </_join_words>
134
                                                    </2>
135
                                                </_alt>
136
                                            </1>
137
                                            <2>$ScientificNameAuthor</2>
138
                                        </_join_words>
139
                                    </identifyingtaxonomicname>
122 140
                                    <parent_id>
123 141
                                        <taxonlabel>
124 142
                                            <parent_id>
inputs/QMOR/Specimen/test.xml.ref
142 142
                                    </creator_id>
143 143
                                    <family>$family</family>
144 144
                                    <genus>$genus</genus>
145
                                    <identifyingtaxonomicname>
146
                                        <_join_words>
147
                                            <1>
148
                                                <_alt>
149
                                                    <1>$scientificName</1>
150
                                                    <2>
151
                                                        <_join_words>
152
                                                            <1>$family</1>
153
                                                            <2>$genus</2>
154
                                                            <3>$specificEpithet</3>
155
                                                            <5>
156
                                                                <_join_words>
157
                                                                    <1>
158
                                                                        <_if name="if has infraspecificEpithet">
159
                                                                            <cond>$infraspecificEpithet</cond>
160
                                                                            <then>$taxonRank</then>
161
                                                                        </_if>
162
                                                                    </1>
163
                                                                    <2>$infraspecificEpithet</2>
164
                                                                </_join_words>
165
                                                            </5>
166
                                                        </_join_words>
167
                                                    </2>
168
                                                </_alt>
169
                                            </1>
170
                                            <2>$scientificNameAuthorship</2>
171
                                        </_join_words>
172
                                    </identifyingtaxonomicname>
145 173
                                    <parent_id>
146 174
                                        <taxonlabel>
147 175
                                            <rank>$taxonRank</rank>
inputs/SpeciesLink/Specimen/test.xml.ref
366 366
                                            <2>$dwc_terms_genus</2>
367 367
                                        </_alt>
368 368
                                    </genus>
369
                                    <identifyingtaxonomicname>
370
                                        <_join_words>
371
                                            <1>
372
                                                <_alt>
373
                                                    <1>
374
                                                        <_alt>
375
                                                            <0>$conceptual_darwin_2003_1_0_ScientificName</0>
376
                                                            <1>$dwc_dwcore_ScientificName</1>
377
                                                            <2>$dwc_terms_scientificName</2>
378
                                                        </_alt>
379
                                                    </1>
380
                                                    <2>
381
                                                        <_join_words>
382
                                                            <1>
383
                                                                <_alt>
384
                                                                    <0>$conceptual_darwin_2003_1_0_Family</0>
385
                                                                    <1>$dwc_dwcore_Family</1>
386
                                                                    <2>$dwc_terms_family</2>
387
                                                                </_alt>
388
                                                            </1>
389
                                                            <2>
390
                                                                <_alt>
391
                                                                    <0>$conceptual_darwin_2003_1_0_Genus</0>
392
                                                                    <1>$dwc_dwcore_Genus</1>
393
                                                                    <2>$dwc_terms_genus</2>
394
                                                                </_alt>
395
                                                            </2>
396
                                                            <3>
397
                                                                <_alt>
398
                                                                    <0>$conceptual_darwin_2003_1_0_Species</0>
399
                                                                    <1>$dwc_dwcore_SpecificEpithet</1>
400
                                                                    <2>$dwc_terms_specificEpithet</2>
401
                                                                </_alt>
402
                                                            </3>
403
                                                            <4>$conceptual_darwin_2003_1_0_Subspecies</4>
404
                                                            <5>
405
                                                                <_alt>
406
                                                                    <0>$dwc_dwcore_InfraspecificEpithet</0>
407
                                                                    <1>$dwc_terms_infraspecificEpithet</1>
408
                                                                </_alt>
409
                                                            </5>
410
                                                        </_join_words>
411
                                                    </2>
412
                                                </_alt>
413
                                            </1>
414
                                            <2>
415
                                                <_alt>
416
                                                    <1>$dwc_terms_scientificNameAuthorship</1>
417
                                                    <2>$conceptual_darwin_2003_1_0_ScientificNameAuthor</2>
418
                                                    <3>$dwc_dwcore_AuthorYearOfScientificName</3>
419
                                                </_alt>
420
                                            </2>
421
                                        </_join_words>
422
                                    </identifyingtaxonomicname>
369 423
                                    <parent_id>
370 424
                                        <taxonlabel>
371 425
                                            <parent_id>
inputs/VegBank/taxonobservation_/test.xml.ref
51 51
                                    <creationdate><_date><date><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></date></_date></creationdate>
52 52
                                    <family>$Family</family>
53 53
                                    <genus>$Genus</genus>
54
                                    <identifyingtaxonomicname>
55
                                        <_join_words>
56
                                            <1>$Family</1>
57
                                            <2>$Genus</2>
58
                                            <3>$Species</3>
59
                                            <4>$Subspecies</4>
60
                                            <7>
61
                                                <_join_words>
62
                                                    <1>var. </1>
63
                                                    <2>$Variety</2>
64
                                                </_join_words>
65
                                            </7>
66
                                            <8>
67
                                                <_join_words>
68
                                                    <1>fm. </1>
69
                                                    <2>$Forma</2>
70
                                                </_join_words>
71
                                            </8>
72
                                        </_join_words>
73
                                    </identifyingtaxonomicname>
54 74
                                    <parent_id>
55 75
                                        <taxonlabel>
56 76
                                            <parent_id>
......
150 170
        </path>
151 171
    </_simplifyPath>
152 172
</VegBIEN>
153
Inserted 21 new rows into database
173
Inserted 22 new rows into database
mappings/for_review/VegCore-VegBIEN.csv
145 145
forma,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel/identifyingtaxonomicname",
146 146
cultivar,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel/identifyingtaxonomicname",
147 147
scientificNameAuthorship,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel/identifyingtaxonomicname",
148
scientificName,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
149
binomial,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
150
family,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
151
genus,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
152
specificEpithet,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
153
subspecies,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
154
infraspecificEpithet,"//*_id/taxonlabel/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/cond",
155
taxonRank,"//*_id/taxonlabel/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/then",
156
infraspecificEpithet,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
157
taxonName,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
158
variety,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
159
forma,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
160
cultivar,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
161
scientificNameAuthorship,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname",
162 148
acceptedScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/author,
163 149
acceptedBinomial,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/binomial,
164 150
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/family,
......
207 193
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/creator_id/party/fullname,
208 194
family,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/family,
209 195
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/genus,
196
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
197
binomial,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
198
family,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
199
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
200
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
201
subspecies,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
202
infraspecificEpithet,"//taxonlabel/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/cond",
203
taxonRank,"//taxonlabel/identifyingtaxonomicname/_if[@name=""if has infraspecificEpithet""]/then",
204
infraspecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
205
taxonName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
206
variety,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
207
forma,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
208
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
209
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/identifyingtaxonomicname,
210 210
verbatimScientificName,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
211 211
morphospecies,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/else",
212 212
parentScientificNameID,"//parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
......
241 241
matchedGenusFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction,
242 242
matchedSpeciesFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction,
243 243
matchedTaxonFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction,
244
morphospecies,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/morphospecies,
244 245
verbatimScientificName,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
245
morphospecies,"//taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/then",
246 246
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/species,
247 247
verbatimTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonlabel/verbatimrank,
248 248
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonlabel/taxonomicname,
inputs/SpeciesLink/Specimen/VegBIEN.csv
116 116
dwc_terms_scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/1",
117 117
conceptual_darwin_2003_1_0_ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/2",
118 118
dwc_dwcore_AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/3",
119
conceptual_darwin_2003_1_0_ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
120
dwc_dwcore_ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
121
dwc_terms_scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
122
conceptual_darwin_2003_1_0_Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
123
dwc_dwcore_Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
124
dwc_terms_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
125
conceptual_darwin_2003_1_0_Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
126
dwc_dwcore_Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
127
dwc_terms_genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
128
conceptual_darwin_2003_1_0_Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
129
dwc_dwcore_SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
130
dwc_terms_specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
131
conceptual_darwin_2003_1_0_Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
132
dwc_dwcore_InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
133
dwc_terms_infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
134
dwc_dwcore_InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
135
dwc_terms_infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
136
dwc_terms_scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/1",
137
conceptual_darwin_2003_1_0_ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/2",
138
dwc_dwcore_AuthorYearOfScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/3",
139 119
dwc_terms_scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author/_alt/1,
140 120
conceptual_darwin_2003_1_0_ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author/_alt/2,
141 121
dwc_dwcore_AuthorYearOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author/_alt/3,
......
155 135
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
156 136
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
157 137
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
138
conceptual_darwin_2003_1_0_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
139
dwc_dwcore_ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
140
dwc_terms_scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
141
conceptual_darwin_2003_1_0_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
142
dwc_dwcore_Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
143
dwc_terms_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
144
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
145
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
146
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
147
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
148
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
149
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
150
conceptual_darwin_2003_1_0_Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
151
dwc_dwcore_InfraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
152
dwc_terms_infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
153
dwc_dwcore_InfraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
154
dwc_terms_infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
155
dwc_terms_scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/1,
156
conceptual_darwin_2003_1_0_ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/2,
157
dwc_dwcore_AuthorYearOfScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2/_alt/3,
158 158
conceptual_darwin_2003_1_0_Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
159 159
conceptual_darwin_2003_1_0_Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
160 160
dwc_dwcore_SpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
inputs/VegBank/taxonobservation_/VegBIEN.csv
16 16
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
17 17
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""var. ""]/2",
18 18
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2",
19
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
20
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
21
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
22
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
23
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""var. ""]/2",
24
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2",
25 19
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value,
26 20
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
27 21
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
22
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
23
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
24
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
25
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
26
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""var. ""]/2",
27
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2",
28 28
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=forma]/taxonepithet",
29 29
Variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=variety]/taxonepithet",
30 30
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
mappings/VegCore-VegBIEN.csv
145 145
forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2",
146 146
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/9/_join_words:[1=""cult. ""]/2",
147 147
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
148
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/1",
149
binomial,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
150
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
151
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
152
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
153
subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
154
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
155
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
156
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
157
taxonName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6",
158
variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""var. ""]/2",
159
forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2",
160
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/9/_join_words:[1=""cult. ""]/2",
161
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
162 148
acceptedScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/author,
163 149
acceptedBinomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/binomial,
164 150
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/family,
......
207 193
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
208 194
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/family,
209 195
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/genus,
196
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/1,
197
binomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
198
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
199
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
200
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
201
subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
202
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
203
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
204
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
205
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6,
206
variety,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""var. ""]/2",
207
forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""fm. ""]/2",
208
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/9/_join_words:[1=""cult. ""]/2",
209
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,
210 210
verbatimScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
211 211
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/morphospecies/_if[@name=""if has verbatim name""]/else",
212 212
parentScientificNameID,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists",
......
241 241
matchedGenusFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2,
242 242
matchedSpeciesFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3,
243 243
matchedTaxonFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/4,
244
morphospecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies,
244 245
verbatimScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists",
245
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/morphospecies/_if[@name=""if has verbatim name""]/then",
246 246
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/species,
247 247
verbatimTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/verbatimrank,
248 248
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname,
inputs/MO/Specimen/VegBIEN.csv
26 26
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
27 27
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
28 28
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
29
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
30
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
31
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
32
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
33
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
34
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/then/identifyingtaxonomicname/_alt/2/_join_words/2",
35 29
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/author,
36 30
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/binomial,
37 31
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
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