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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 about 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5643 about 12 years Aaron Marcuse-Kubitza tnrs_db: Fixed bug where needed to remove inter...
  config 272 almost 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5648 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Also include morp...
  lib 5642 about 12 years Aaron Marcuse-Kubitza sql.py: mk_select(): Don't add table0 to order_...
  mappings 5648 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Also include morp...
  schemas 5649 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonlabel: Renamed taxono...
  to_do 4524 about 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 about 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.86 KB 5459 about 12 years Aaron Marcuse-Kubitza Makefile: Moved setting of $(root) before inclu...
README.TXT 12.9 KB 5563 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: import_all: Added NCBI...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 about 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 about 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5649 10/18/2012 02:31 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonlabel: Renamed taxonomicnamewithauthor to taxonomicname because it is equivalent to Darwin Core's scientificName

5648 10/18/2012 02:25 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also include morphospecies in the identifyingtaxonomicname, except for the matched TNRS taxonlabel, which should not contain morphospecies information

5647 10/18/2012 02:14 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Mapped acceptedScientificName

5646 10/18/2012 01:51 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also create the identifyingtaxonomicname on the verbatim taxonlabel supplied by the datasource, in addition to on the TNRS input taxonlabel that the verbatim taxonlabel is matched up with

5645 10/18/2012 01:46 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Expanded brace expressions for putting together the identifyingtaxonomicname

5644 10/18/2012 01:21 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Always generate the concatenated identifyingtaxonomicname, even for higher taxa, to ensure that this field is always populated. Note that this will cause names of higher taxa to be scrubbed by TNRS, but this is usually not a problem because such names either have no match or not a close enough match based on the name only. Naming conventions generally cause names at different ranks to be different, so that collisions with lower ranks should not be a problem.

5643 10/18/2012 01:05 PM Aaron Marcuse-Kubitza

tnrs_db: Fixed bug where needed to remove internal identifyingtaxonomicname duplicates as well as duplicates with existing Name_submitted values, to avoid violating the TNRS.tnrs pkey constraint when the scrubbed names are later inserted. Note that the taxonlabel_0_unique_identifying_name unique index is not sufficient to prevent internal duplicates, because it includes the creator_id (and thus allows multiple instances of the same name defined by different creators).

5642 10/18/2012 01:01 PM Aaron Marcuse-Kubitza

sql.py: mk_select(): Don't add table0 to order_by with no table, because this could cause it not to match a corresponding DISTINCT ON column with no explicit table. PostgreSQL apparently does not treat a column with no explicit table and a column with the applicable table as identical for purposes of ORDER BY/DISTINCT ON checking, even when they refer to the same physical column.

5641 10/18/2012 12:53 PM Aaron Marcuse-Kubitza

sql.py: mk_select(): order_by defaults to first distinct_on column when distinct_on provided

5640 10/18/2012 12:36 PM Aaron Marcuse-Kubitza

tnrs_db: Updated with schema changes

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