Project

General

Profile

Statistics
| Revision:
Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5643 about 12 years Aaron Marcuse-Kubitza tnrs_db: Fixed bug where needed to remove inter...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5651 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonlabel: Require either...
  lib 5642 about 12 years Aaron Marcuse-Kubitza sql.py: mk_select(): Don't add table0 to order_...
  mappings 5650 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Also generate the...
  schemas 5654 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: taxonlabel: Renamed taxonl...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.86 KB 5459 over 12 years Aaron Marcuse-Kubitza Makefile: Moved setting of $(root) before inclu...
README.TXT 12.9 KB 5563 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: import_all: Added NCBI...
map 989 Bytes 5158 over 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5654 10/18/2012 03:06 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonlabel: Renamed taxonlabel_2_propagate_canon_label_id() to taxonlabel_2_set_canon_label_id() for clarity

5653 10/18/2012 03:04 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonlabel_2_propagate_canon_label_id(): If no matched taxonlabel, make self-reference. This fixes a bug in analytical_db_view where rows without a canon_label_id were excluded because they did not have a corresponding canonical taxonlabel.

5652 10/18/2012 02:53 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonlabel_unique unique index: Removed binomial, author, taxonomicname, and morphospecies because these are now part of the identifyingtaxonomicname, which is also in the unique index

5651 10/18/2012 02:44 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonlabel: Require either an identifyingtaxonomicname or a taxonepithet. The NCBI inserted row count decreases by one because this prunes off a taxonlabel created for a parent node which was not contained in the first two rows (remember that NCBI taxa are not in dependency order, so parents are often imported after children).

5650 10/18/2012 02:41 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also generate the identifyingtaxonomicname for the original* taxondetermination's taxonlabel

5649 10/18/2012 02:31 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxonlabel: Renamed taxonomicnamewithauthor to taxonomicname because it is equivalent to Darwin Core's scientificName

5648 10/18/2012 02:25 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also include morphospecies in the identifyingtaxonomicname, except for the matched TNRS taxonlabel, which should not contain morphospecies information

5647 10/18/2012 02:14 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Mapped acceptedScientificName

5646 10/18/2012 01:51 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Also create the identifyingtaxonomicname on the verbatim taxonlabel supplied by the datasource, in addition to on the TNRS input taxonlabel that the verbatim taxonlabel is matched up with

5645 10/18/2012 01:46 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Expanded brace expressions for putting together the identifyingtaxonomicname

View all revisions | View revisions

Also available in: Atom